Guide to the Human Genome
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Name: LOC100290196 Sequence: fasta or formatted (277aa) NCBI GI: 239747550
Description:

PREDICTED: hypothetical protein XP_002347647

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         28           2
 C cysteine            1.4          4           1
 D aspartate           2.2          6           1
 E glutamate           4.7         13           2
 F phenylalanine       2.5          7           1
 G glycine            10.5         29           1
 H histidine           1.4          4           1
 I isoleucine          2.2          6           1
 K lysine              4.7         13           4
 L leucine             3.6         10           1
 M methionine          1.1          3           1
 N asparagine          2.2          6           1
 P proline            13.4         37           2
 Q glutamine           6.5         18           2
 R arginine            8.7         24           1
 S serine             14.1         39           2
 T threonine           5.1         14           2
 V valine              3.2          9           1
 W tryptophan          1.1          3           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347647 
LOC100291868          1.000   PREDICTED: hypothetical protein XP_002345322 
LOC100289429          1.000   PREDICTED: hypothetical protein XP_002342197 
LOC100130882          0.048   PREDICTED: hypothetical protein 
LOC100130882          0.048   PREDICTED: hypothetical protein 
LOC100130882          0.048   PREDICTED: hypothetical protein 
INPP5J                0.042   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
PRB3                  0.037   proline-rich protein BstNI subfamily 3 precursor [H...
SRRM2                 0.035   splicing coactivator subunit SRm300 
LOC729417             0.035   PREDICTED: hypothetical protein 
LOC729417             0.035   PREDICTED: hypothetical protein 
LOC729417             0.035   PREDICTED: hypothetical protein 
CXorf67               0.035   hypothetical protein LOC340602 
FNDC1                 0.035   fibronectin type III domain containing 1 
NAV2                  0.035   neuron navigator 2 isoform 3 
NAV2                  0.035   neuron navigator 2 isoform 1 
NAV2                  0.035   neuron navigator 2 isoform 2 
BSN                   0.033   bassoon protein 
COL27A1               0.031   collagen, type XXVII, alpha 1 
LOC100133756          0.031   PREDICTED: hypothetical protein, partial 
ZNF598                0.031   zinc finger protein 598 
LOC728317             0.031   PREDICTED: hypothetical protein 
LOC728307             0.031   PREDICTED: hypothetical protein 
TAF4                  0.029   TBP-associated factor 4 
MAGI2                 0.029   membrane associated guanylate kinase, WW and PDZ dom...
PTPRN                 0.029   protein tyrosine phosphatase, receptor type, N precur...
SPEG                  0.029   SPEG complex locus 
COL3A1                0.029   collagen type III alpha 1 preproprotein 
LOC728317             0.029   PREDICTED: hypothetical protein 
C6orf132              0.029   PREDICTED: chromosome 6 open reading frame 132 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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