Guide to the Human Genome
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Name: LOC100131276 Sequence: fasta or formatted (154aa) NCBI GI: 169167163
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {154aa} PREDICTED: hypothetical protein
alt prot {154aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         11           1
 C cysteine            3.2          5           1
 D aspartate           0.6          1           1
 E glutamate           2.6          4           1
 F phenylalanine       2.6          4           1
 G glycine             8.4         13           1
 H histidine           1.3          2           1
 I isoleucine          3.9          6           2
 K lysine              3.9          6           1
 L leucine             9.7         15           2
 M methionine          0.6          1           1
 N asparagine          3.2          5           1
 P proline            12.3         19           2
 Q glutamine           4.5          7           2
 R arginine            8.4         13           1
 S serine             11.7         18           2
 T threonine           5.2          8           2
 V valine              5.2          8           1
 W tryptophan          4.5          7           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131276          0.993   PREDICTED: hypothetical protein 
LOC100131276          0.993   PREDICTED: hypothetical protein 
C4orf39               0.658   hypothetical protein LOC152756 
LOC728888             0.030   PREDICTED: similar to acyl-CoA synthetase medium-ch...
CACNA1E               0.023   calcium channel, voltage-dependent, R type, alpha 1E...
LOC100132247          0.020   hypothetical protein LOC100132247 
NPIPL3                0.020   nuclear pore complex interacting protein-like 3 [Ho...
PDE3A                 0.016   phosphodiesterase 3A 
LOC729978             0.016   PREDICTED: NPIP-like protein 2 isoform 2 
CDGAP                 0.016   Cdc42 GTPase-activating protein 
CTNND2                0.016   catenin (cadherin-associated protein), delta 2 (neur...
MAST1                 0.013   microtubule associated serine/threonine kinase 1 [Ho...
WDR25                 0.013   WD repeat domain 25 
WDR25                 0.013   WD repeat domain 25 
ZNF804A               0.013   zinc finger protein 804A 
DGAT2                 0.013   diacylglycerol O-acyltransferase 2 
RNF126                0.013   ring finger protein 126 
LOC729602             0.013   PREDICTED: NPIP-like protein ENSP00000283050 isofor...
PHF21A                0.013   BRAF35/HDAC2 complex isoform b 
PHF21A                0.013   BRAF35/HDAC2 complex isoform a 
TRIM60                0.013   ring finger protein 129 
SYT8                  0.013   synaptotagmin VIII 
MKL1                  0.010   megakaryoblastic leukemia 1 protein 
MUC16                 0.010   mucin 16 
LOC100131738          0.010   PREDICTED: hypothetical protein 
LOC729570             0.010   PREDICTED: hypothetical protein 
LOC100128719          0.010   PREDICTED: hypothetical protein, partial 
LOC729570             0.010   PREDICTED: hypothetical protein 
LOC100128719          0.010   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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