SPRN 33988

Name: SPRN	Sequence: fasta or formatted (151aa)		NCBI GI: 61676082
Description: shadow of prion protein		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 22.5 34 3 C cysteine 2.0 3 1 D aspartate 2.0 3 1 E glutamate 2.6 4 2 F phenylalanine 0.7 1 1 G glycine 23.2 35 2 H histidine 0.0 0 0 I isoleucine 0.7 1 1 K lysine 0.7 1 1 L leucine 9.3 14 3 M methionine 0.7 1 1 N asparagine 1.3 2 1 P proline 6.0 9 1 Q glutamine 0.7 1 1 R arginine 11.3 17 2 S serine 5.3 8 2 T threonine 2.6 4 1 V valine 4.0 6 1 W tryptophan 2.6 4 1 Y tyrosine 2.0 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 shadow of prion protein GATA4 0.067 GATA binding protein 4 KRT9 0.067 keratin 9 ZSWIM5 0.067 zinc finger, SWIM domain containing 5 ARID1B 0.067 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.067 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.067 AT rich interactive domain 1B (SWI1-like) isoform 3 ... HECA 0.063 headcase HOXA13 0.060 homeobox A13 MBD2 0.060 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.060 methyl-CpG binding domain protein 2 isoform 1 PABPN1 0.060 poly(A) binding protein, nuclear 1 KRT10 0.060 keratin 10 PHOX2B 0.060 paired-like homeobox 2b KRT2 0.060 keratin 2 ELN 0.060 elastin isoform e precursor ELN 0.060 elastin isoform a precursor PPP1R10 0.060 protein phosphatase 1, regulatory subunit 10 LOC100293268 0.056 PREDICTED: hypothetical protein ZNF503 0.056 zinc finger protein 503 COL1A2 0.056 alpha 2 type I collagen DMKN 0.056 dermokine isoform 4 precursor DMKN 0.056 dermokine isoform 2 precursor KRT1 0.053 keratin 1 OGFR 0.053 opioid growth factor receptor LOC100131354 0.053 PREDICTED: hypothetical protein LOR 0.053 loricrin FAM98B 0.053 family with sequence similarity 98, member B isofor... KRT15 0.053 keratin 15 EN1 0.053 engrailed homeobox 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.