Guide to the Human Genome
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Name: SPRN Sequence: fasta or formatted (151aa) NCBI GI: 61676082
Description:

shadow of prion protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            22.5         34           3
 C cysteine            2.0          3           1
 D aspartate           2.0          3           1
 E glutamate           2.6          4           2
 F phenylalanine       0.7          1           1
 G glycine            23.2         35           2
 H histidine           0.0          0           0
 I isoleucine          0.7          1           1
 K lysine              0.7          1           1
 L leucine             9.3         14           3
 M methionine          0.7          1           1
 N asparagine          1.3          2           1
 P proline             6.0          9           1
 Q glutamine           0.7          1           1
 R arginine           11.3         17           2
 S serine              5.3          8           2
 T threonine           2.6          4           1
 V valine              4.0          6           1
 W tryptophan          2.6          4           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   shadow of prion protein 
GATA4                 0.067   GATA binding protein 4 
KRT9                  0.067   keratin 9 
ZSWIM5                0.067   zinc finger, SWIM domain containing 5 
ARID1B                0.067   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.067   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.067   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HECA                  0.063   headcase 
HOXA13                0.060   homeobox A13 
MBD2                  0.060   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.060   methyl-CpG binding domain protein 2 isoform 1 
PABPN1                0.060   poly(A) binding protein, nuclear 1 
KRT10                 0.060   keratin 10 
PHOX2B                0.060   paired-like homeobox 2b 
KRT2                  0.060   keratin 2 
ELN                   0.060   elastin isoform e precursor 
ELN                   0.060   elastin isoform a precursor 
PPP1R10               0.060   protein phosphatase 1, regulatory subunit 10 
LOC100293268          0.056   PREDICTED: hypothetical protein 
ZNF503                0.056   zinc finger protein 503 
COL1A2                0.056   alpha 2 type I collagen 
DMKN                  0.056   dermokine isoform 4 precursor 
DMKN                  0.056   dermokine isoform 2 precursor 
KRT1                  0.053   keratin 1 
OGFR                  0.053   opioid growth factor receptor 
LOC100131354          0.053   PREDICTED: hypothetical protein 
LOR                   0.053   loricrin 
FAM98B                0.053   family with sequence similarity 98, member B isofor...
KRT15                 0.053   keratin 15 
EN1                   0.053   engrailed homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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