Guide to the Human Genome
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Name: KRT15 Sequence: fasta or formatted (456aa) NCBI GI: 24430190
Description:

keratin 15

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         33           2
 C cysteine            0.9          4           1
 D aspartate           4.6         21           2
 E glutamate          10.7         49           3
 F phenylalanine       3.3         15           2
 G glycine            13.8         63           4
 H histidine           0.9          4           1
 I isoleucine          4.6         21           1
 K lysine              4.2         19           2
 L leucine             9.9         45           2
 M methionine          3.3         15           1
 N asparagine          3.9         18           1
 P proline             0.7          3           1
 Q glutamine           5.3         24           2
 R arginine            5.7         26           2
 S serine              8.6         39           3
 T threonine           5.5         25           3
 V valine              4.2         19           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 15 
KRT13                 0.706   keratin 13 isoform a 
KRT13                 0.702   keratin 13 isoform b 
KRT14                 0.615   keratin 14 
KRT16                 0.608   keratin 16 
KRT17                 0.566   keratin 17 
KRT19                 0.543   keratin 19 
KRT10                 0.533   keratin 10 
KRT12                 0.516   keratin 12 
KRT24                 0.477   keratin 24 
KRT9                  0.476   keratin 9 
KRT28                 0.449   keratin 25D 
KRT27                 0.447   keratin 27 
KRT25                 0.433   keratin 25 
KRT36                 0.432   keratin 36 
KRT35                 0.414   keratin 35 
KRT26                 0.404   keratin 26 
KRT32                 0.397   keratin 32 
KRT20                 0.394   keratin 20 
KRT33A                0.386   keratin 33A 
KRT31                 0.386   keratin 31 
KRT33B                0.381   type I hair keratin 3B 
KRT34                 0.379   keratin 34 
KRT18                 0.357   keratin 18 
KRT18                 0.357   keratin 18 
KRT40                 0.343   type I hair keratin KA36 
KRT39                 0.340   type I hair keratin KA35 
KRT38                 0.339   keratin 38 
KRT23                 0.339   keratin 23 
KRT37                 0.336   keratin 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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