Guide to the Human Genome
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Name: VSIG4 Sequence: fasta or formatted (399aa) NCBI GI: 6005958
Description:

V-set and immunoglobulin domain containing 4 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {305aa} V-set and immunoglobulin domain containing 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         21           2
 C cysteine            2.5         10           2
 D aspartate           5.5         22           2
 E glutamate           4.5         18           1
 F phenylalanine       2.3          9           1
 G glycine             7.5         30           1
 H histidine           2.0          8           1
 I isoleucine          5.3         21           2
 K lysine              5.3         21           1
 L leucine             9.0         36           4
 M methionine          2.3          9           1
 N asparagine          2.5         10           2
 P proline             5.3         21           2
 Q glutamine           6.3         25           2
 R arginine            3.5         14           1
 S serine              8.5         34           2
 T threonine           8.8         35           2
 V valine              8.0         32           2
 W tryptophan          1.5          6           1
 Y tyrosine            4.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set and immunoglobulin domain containing 4 isoform ... 
VSIG4                 0.404   V-set and immunoglobulin domain containing 4 isofor...
GPA33                 0.047   transmembrane glycoprotein A33 precursor 
F11R                  0.044   F11 receptor precursor 
TTN                   0.038   titin isoform N2-A 
CXADR                 0.036   coxsackie virus and adenovirus receptor precursor [Ho...
ASAM                  0.034   adipocyte-specific adhesion molecule 
CADM3                 0.032   cell adhesion molecule 3 isoform 2 
CADM3                 0.032   cell adhesion molecule 3 isoform 1 
FCRL6                 0.032   Fc receptor-like 6 
MXRA5                 0.032   adlican 
HSPG2                 0.030   heparan sulfate proteoglycan 2 
PXDN                  0.030   peroxidasin 
ICAM5                 0.030   intercellular adhesion molecule 5 precursor 
NTM                   0.028   neurotrimin isoform 3 
HAPLN3                0.028   hyaluronan and proteoglycan link protein 3 
HMCN2                 0.028   PREDICTED: hemicentin 2 
HMCN1                 0.028   hemicentin 1 
LOC100292387          0.027   PREDICTED: similar to hemicentin 2 
HMCN2                 0.027   PREDICTED: hemicentin 2 
LOC100289200          0.027   PREDICTED: hypothetical protein XP_002342997 
JAM3                  0.027   junctional adhesion molecule 3 precursor 
IGSF10                0.027   immunoglobulin superfamily, member 10 
HMCN2                 0.025   PREDICTED: hemicentin 2 
MDGA1                 0.025   MAM domain containing glycosylphosphatidylinositol a...
NTM                   0.025   neurotrimin isoform 4 
NTM                   0.025   neurotrimin isoform 2 
NTM                   0.025   neurotrimin isoform 1 
JAM2                  0.025   junctional adhesion molecule 2 precursor 
PXDNL                 0.024   peroxidasin homolog-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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