Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ICAM5 Sequence: fasta or formatted (924aa) NCBI GI: 189571583
Description:

intercellular adhesion molecule 5 precursor

Referenced in:

Additional Immunoglobulin-related Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9        119           2
 C cysteine            3.2         30           1
 D aspartate           3.0         28           2
 E glutamate           7.6         70           2
 F phenylalanine       2.3         21           2
 G glycine            10.7         99           3
 H histidine           1.3         12           1
 I isoleucine          1.6         15           1
 K lysine              1.0          9           2
 L leucine             9.5         88           2
 M methionine          0.5          5           1
 N asparagine          3.0         28           2
 P proline             8.2         76           3
 Q glutamine           2.9         27           2
 R arginine            8.3         77           2
 S serine              6.9         64           2
 T threonine           6.1         56           1
 V valine              7.7         71           3
 W tryptophan          1.7         16           1
 Y tyrosine            1.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intercellular adhesion molecule 5 precursor 
ICAM3                 0.239   intercellular adhesion molecule 3 precursor 
ICAM1                 0.218   intercellular adhesion molecule 1 precursor 
HMCN2                 0.064   PREDICTED: hemicentin 2 
LOC100292387          0.063   PREDICTED: similar to hemicentin 2 
HMCN2                 0.059   PREDICTED: hemicentin 2 
HMCN2                 0.059   PREDICTED: hemicentin 2 
HMCN1                 0.057   hemicentin 1 
HSPG2                 0.050   heparan sulfate proteoglycan 2 
ICAM2                 0.048   intercellular adhesion molecule 2 precursor 
ICAM2                 0.048   intercellular adhesion molecule 2 precursor 
ICAM2                 0.048   intercellular adhesion molecule 2 precursor 
ICAM2                 0.048   intercellular adhesion molecule 2 precursor 
ICAM2                 0.048   intercellular adhesion molecule 2 precursor 
IGSF10                0.041   immunoglobulin superfamily, member 10 
CD22                  0.039   CD22 molecule 
VCAM1                 0.038   vascular cell adhesion molecule 1 isoform a precursor...
NFASC                 0.036   neurofascin isoform 6 precursor 
NFASC                 0.036   neurofascin isoform 5 precursor 
NFASC                 0.036   neurofascin isoform 3 precursor 
NFASC                 0.036   neurofascin isoform 4 precursor 
NFASC                 0.036   neurofascin isoform 2 precursor 
NFASC                 0.036   neurofascin isoform 1 precursor 
ICAM4                 0.036   intercellular adhesion molecule 4 isoform 1 precursor...
ICAM4                 0.035   intercellular adhesion molecule 4 isoform 2 precurso...
LOC100289200          0.034   PREDICTED: hypothetical protein XP_002342997 
PXDN                  0.033   peroxidasin 
NCAM2                 0.032   neural cell adhesion molecule 2 precursor 
ROBO2                 0.032   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.032   roundabout, axon guidance receptor, homolog 2 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press