Guide to the Human Genome
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Name: MDGA1 Sequence: fasta or formatted (955aa) NCBI GI: 24111244
Description:

MAM domain containing glycosylphosphatidylinositol anchor 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         62           3
 C cysteine            2.3         22           1
 D aspartate           4.7         45           2
 E glutamate           4.9         47           2
 F phenylalanine       2.8         27           2
 G glycine             6.6         63           2
 H histidine           1.9         18           1
 I isoleucine          3.8         36           2
 K lysine              4.3         41           2
 L leucine             9.2         88           4
 M methionine          1.3         12           1
 N asparagine          4.7         45           2
 P proline             8.2         78           4
 Q glutamine           5.2         50           2
 R arginine            6.5         62           2
 S serine              7.3         70           2
 T threonine           6.4         61           2
 V valine              8.6         82           3
 W tryptophan          1.2         11           1
 Y tyrosine            3.7         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MAM domain containing glycosylphosphatidylinositol a... 
MDGA2                 0.527   MAM domain containing 1 isoform 1 
MDGA2                 0.361   MAM domain containing 1 isoform 2 
HMCN2                 0.073   PREDICTED: hemicentin 2 
HSPG2                 0.061   heparan sulfate proteoglycan 2 
HMCN2                 0.059   PREDICTED: hemicentin 2 
HMCN2                 0.059   PREDICTED: hemicentin 2 
LOC100292387          0.058   PREDICTED: similar to hemicentin 2 
CNTN4                 0.057   contactin 4 isoform a precursor 
HMCN1                 0.054   hemicentin 1 
C10orf112             0.052   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.051   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.051   PREDICTED: chromosome 10 open reading frame 112 [Ho...
CNTN5                 0.049   contactin 5 isoform long 
CNTN5                 0.049   contactin 5 isoform short 
CNTN3                 0.049   contactin 3 
PTK7                  0.048   PTK7 protein tyrosine kinase 7 isoform a precursor [...
DSCAM                 0.048   Down syndrome cell adhesion molecule isoform CHD2-42...
TTN                   0.047   titin isoform N2-A 
PXDN                  0.046   peroxidasin 
MXRA5                 0.046   adlican 
IGSF10                0.044   immunoglobulin superfamily, member 10 
DSCAML1               0.044   Down syndrome cell adhesion molecule like 1 
IGSF9                 0.043   immunoglobulin superfamily, member 9 isoform a [Hom...
PTK7                  0.043   PTK7 protein tyrosine kinase 7 isoform d precursor [...
CNTN6                 0.040   contactin 6 
IGSF9                 0.039   immunoglobulin superfamily, member 9 isoform b [Hom...
NFASC                 0.038   neurofascin isoform 3 precursor 
NFASC                 0.038   neurofascin isoform 2 precursor 
NFASC                 0.038   neurofascin isoform 4 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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