Guide to the Human Genome
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Name: SOX21 Sequence: fasta or formatted (276aa) NCBI GI: 5902108
Description:

SRY-box 21

Referenced in:

SOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            22.5         62          13
 C cysteine            0.7          2           1
 D aspartate           2.5          7           1
 E glutamate           4.0         11           1
 F phenylalanine       2.5          7           2
 G glycine             8.7         24           3
 H histidine           3.6         10           1
 I isoleucine          1.8          5           1
 K lysine              6.9         19           2
 L leucine             8.3         23           2
 M methionine          3.6         10           1
 N asparagine          2.2          6           1
 P proline            10.1         28           2
 Q glutamine           1.8          5           1
 R arginine            4.3         12           2
 S serine              7.6         21           5
 T threonine           1.4          4           1
 V valine              2.5          7           1
 W tryptophan          1.1          3           1
 Y tyrosine            3.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRY-box 21 
SOX14                 0.497   SRY-box 14 
SOX1                  0.340   SRY (sex determining region Y)-box 1 
SOX2                  0.295   sex-determining region Y-box 2 
SOX3                  0.295   SRY (sex determining region Y)-box 3 
SOX15                 0.223   SRY-box 15 
SOX4                  0.214   SRY (sex determining region Y)-box 4 
SOX11                 0.205   SRY-box 11 
SRY                   0.188   sex determining region Y 
SOX12                 0.188   SRY (sex determining region Y)-box 12 
SOX10                 0.184   SRY (sex determining region Y)-box 10 
SOX8                  0.182   SRY (sex determining region Y)-box 8 
SOX9                  0.182   transcription factor SOX9 
SOX17                 0.178   SRY-box 17 
SOX18                 0.165   SRY-box 18 
SOX7                  0.163   SRY-box 7 
SOX13                 0.146   SRY-box 13 
SOX5                  0.144   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.144   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.144   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX6                  0.139   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.139   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.139   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.139   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX30                 0.124   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.124   SRY (sex determining region Y)-box 30 isoform a [Hom...
CIC                   0.101   capicua homolog 
HOXA13                0.075   homeobox A13 
TCF7L1                0.068   HMG-box transcription factor TCF-3 
BBX                   0.064   HMG-BOX transcription factor BBX isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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