SOX2 24652

Name: SOX2	Sequence: fasta or formatted (317aa)		NCBI GI: 28195386
Description: sex-determining region Y-box 2		Referenced in: SOX Family Stem Cells and Early Development
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.2 26 4 C cysteine 0.3 1 1 D aspartate 2.8 9 1 E glutamate 3.8 12 1 F phenylalanine 0.6 2 1 G glycine 11.0 35 5 H histidine 3.5 11 1 I isoleucine 1.3 4 1 K lysine 5.4 17 2 L leucine 6.3 20 2 M methionine 7.9 25 2 N asparagine 4.7 15 1 P proline 8.2 26 2 Q glutamine 5.7 18 2 R arginine 5.4 17 2 S serine 11.4 36 3 T threonine 4.4 14 1 V valine 3.8 12 2 W tryptophan 0.9 3 1 Y tyrosine 4.4 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sex-determining region Y-box 2 SOX1 0.514 SRY (sex determining region Y)-box 1 SOX3 0.506 SRY (sex determining region Y)-box 3 SOX21 0.250 SRY-box 21 SOX14 0.242 SRY-box 14 SOX15 0.190 SRY-box 15 SRY 0.169 sex determining region Y SOX17 0.166 SRY-box 17 SOX10 0.166 SRY (sex determining region Y)-box 10 SOX12 0.156 SRY (sex determining region Y)-box 12 SOX11 0.156 SRY-box 11 SOX18 0.155 SRY-box 18 SOX8 0.152 SRY (sex determining region Y)-box 8 SOX9 0.150 transcription factor SOX9 SOX4 0.150 SRY (sex determining region Y)-box 4 SOX7 0.145 SRY-box 7 SOX5 0.121 SRY (sex determining region Y)-box 5 isoform c [Homo... SOX5 0.121 SRY (sex determining region Y)-box 5 isoform b [Homo... SOX5 0.121 SRY (sex determining region Y)-box 5 isoform a [Homo... SOX6 0.120 SRY (sex determining region Y)-box 6 isoform 4 [Hom... SOX6 0.120 SRY (sex determining region Y)-box 6 isoform 3 [Hom... SOX6 0.120 SRY (sex determining region Y)-box 6 isoform 1 [Homo... SOX6 0.120 SRY (sex determining region Y)-box 6 isoform 2 [Homo... SOX13 0.116 SRY-box 13 SOX30 0.099 SRY (sex determining region Y)-box 30 isoform b [Homo... SOX30 0.099 SRY (sex determining region Y)-box 30 isoform a [Hom... CIC 0.094 capicua homolog HMGB3 0.059 high-mobility group box 3 LOC729595 0.054 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.054 PREDICTED: similar to high mobility group box 3 [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.