Guide to the Human Genome
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Name: SOX6 Sequence: fasta or formatted (804aa) NCBI GI: 70909338
Description:

SRY (sex determining region Y)-box 6 isoform 1

Referenced in:

SOX Family

Other entries for this name:
alt prot [801aa] SRY (sex determining region Y)-box 6 isoform 3
alt prot [841aa] SRY (sex determining region Y)-box 6 isoform 4
alt prot [808aa] SRY (sex determining region Y)-box 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         59           6
 C cysteine            0.9          7           1
 D aspartate           4.6         37           2
 E glutamate           7.5         60           2
 F phenylalanine       1.7         14           2
 G glycine             6.0         48           2
 H histidine           1.9         15           1
 I isoleucine          4.2         34           1
 K lysine              6.7         54           2
 L leucine             7.6         61           2
 M methionine          4.0         32           1
 N asparagine          3.7         30           2
 P proline             7.3         59           2
 Q glutamine           9.0         72           5
 R arginine            5.2         42           2
 S serine              9.8         79           2
 T threonine           6.2         50           3
 V valine              3.2         26           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.4         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRY (sex determining region Y)-box 6 isoform 1 [Homo... 
SOX6                  0.996   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.959   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.923   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX5                  0.519   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX5                  0.518   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.251   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX13                 0.213   SRY-box 13 
SOX17                 0.053   SRY-box 17 
SOX7                  0.051   SRY-box 7 
SOX18                 0.050   SRY-box 18 
SOX4                  0.049   SRY (sex determining region Y)-box 4 
SOX11                 0.049   SRY-box 11 
SOX1                  0.049   SRY (sex determining region Y)-box 1 
SOX14                 0.047   SRY-box 14 
SOX12                 0.047   SRY (sex determining region Y)-box 12 
SOX2                  0.047   sex-determining region Y-box 2 
SOX21                 0.047   SRY-box 21 
SOX3                  0.047   SRY (sex determining region Y)-box 3 
SOX8                  0.046   SRY (sex determining region Y)-box 8 
SOX9                  0.046   transcription factor SOX9 
SOX10                 0.046   SRY (sex determining region Y)-box 10 
SRY                   0.046   sex determining region Y 
SOX15                 0.044   SRY-box 15 
SOX30                 0.040   SRY (sex determining region Y)-box 30 isoform a [Hom...
SOX30                 0.037   SRY (sex determining region Y)-box 30 isoform b [Homo...
CIC                   0.027   capicua homolog 
TCF7L2                0.026   transcription factor 7-like 2 isoform 1 
TCF7L2                0.026   transcription factor 7-like 2 isoform 2 
TCF7L2                0.026   transcription factor 7-like 2 isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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