Guide to the Human Genome
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Name: SOX15 Sequence: fasta or formatted (233aa) NCBI GI: 5902106
Description:

SRY-box 15

Referenced in:

SOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         24           3
 C cysteine            1.3          3           1
 D aspartate           2.6          6           1
 E glutamate           4.7         11           2
 F phenylalanine       1.3          3           1
 G glycine             9.4         22           2
 H histidine           2.1          5           1
 I isoleucine          0.4          1           1
 K lysine              4.7         11           1
 L leucine             9.0         21           2
 M methionine          2.6          6           1
 N asparagine          2.1          5           1
 P proline            13.7         32           2
 Q glutamine           5.2         12           2
 R arginine            7.7         18           2
 S serine             11.2         26           4
 T threonine           3.9          9           2
 V valine              1.3          3           1
 W tryptophan          1.7          4           1
 Y tyrosine            4.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRY-box 15 
SOX3                  0.260   SRY (sex determining region Y)-box 3 
SOX1                  0.258   SRY (sex determining region Y)-box 1 
SOX2                  0.255   sex-determining region Y-box 2 
SOX21                 0.255   SRY-box 21 
SOX14                 0.247   SRY-box 14 
SOX4                  0.221   SRY (sex determining region Y)-box 4 
SOX12                 0.221   SRY (sex determining region Y)-box 12 
SOX11                 0.212   SRY-box 11 
SOX18                 0.210   SRY-box 18 
SOX8                  0.208   SRY (sex determining region Y)-box 8 
SOX17                 0.204   SRY-box 17 
SOX7                  0.197   SRY-box 7 
SOX10                 0.195   SRY (sex determining region Y)-box 10 
SRY                   0.195   sex determining region Y 
SOX9                  0.193   transcription factor SOX9 
SOX13                 0.159   SRY-box 13 
SOX5                  0.157   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.157   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.157   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX6                  0.152   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX6                  0.150   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.150   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.150   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX30                 0.137   SRY (sex determining region Y)-box 30 isoform a [Hom...
SOX30                 0.135   SRY (sex determining region Y)-box 30 isoform b [Homo...
CIC                   0.101   capicua homolog 
HBP1                  0.069   HMG-box transcription factor 1 
HMGB3                 0.069   high-mobility group box 3 
LOC441795             0.067   PREDICTED: high mobility group protein B3-like prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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