Guide to the Human Genome
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Name: SOX17 Sequence: fasta or formatted (414aa) NCBI GI: 11967991
Description:

SRY-box 17

Referenced in:

SOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         45           3
 C cysteine            1.4          6           1
 D aspartate           5.6         23           2
 E glutamate           5.1         21           2
 F phenylalanine       2.4         10           2
 G glycine            11.4         47           3
 H histidine           4.1         17           2
 I isoleucine          1.0          4           1
 K lysine              3.4         14           1
 L leucine             7.7         32           2
 M methionine          3.4         14           1
 N asparagine          1.7          7           1
 P proline            14.3         59           3
 Q glutamine           5.8         24           2
 R arginine            5.1         21           3
 S serine              6.5         27           2
 T threonine           1.7          7           1
 V valine              4.3         18           2
 W tryptophan          0.7          3           1
 Y tyrosine            3.6         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRY-box 17 
SOX18                 0.255   SRY-box 18 
SOX7                  0.240   SRY-box 7 
SOX9                  0.133   transcription factor SOX9 
SOX8                  0.130   SRY (sex determining region Y)-box 8 
SOX3                  0.126   SRY (sex determining region Y)-box 3 
SOX1                  0.124   SRY (sex determining region Y)-box 1 
SOX2                  0.122   sex-determining region Y-box 2 
SOX10                 0.116   SRY (sex determining region Y)-box 10 
SOX14                 0.116   SRY-box 14 
SOX21                 0.111   SRY-box 21 
SOX15                 0.111   SRY-box 15 
SOX11                 0.105   SRY-box 11 
SOX12                 0.105   SRY (sex determining region Y)-box 12 
SOX13                 0.104   SRY-box 13 
SOX4                  0.104   SRY (sex determining region Y)-box 4 
SOX5                  0.102   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.102   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.102   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX6                  0.098   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.098   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.098   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.098   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SRY                   0.095   sex determining region Y 
SOX30                 0.067   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.067   SRY (sex determining region Y)-box 30 isoform a [Hom...
CIC                   0.048   capicua homolog 
TCF7L2                0.046   transcription factor 7-like 2 isoform 5 
TCF7L2                0.043   transcription factor 7-like 2 isoform 1 
BBX                   0.042   HMG-BOX transcription factor BBX isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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