Guide to the Human Genome
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Name: SOX14 Sequence: fasta or formatted (240aa) NCBI GI: 4759162
Description:

SRY-box 14

Referenced in:

SOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         26           2
 C cysteine            1.2          3           1
 D aspartate           3.8          9           1
 E glutamate           3.8          9           1
 F phenylalanine       2.5          6           1
 G glycine             5.8         14           1
 H histidine           3.8          9           1
 I isoleucine          2.5          6           1
 K lysine              7.5         18           2
 L leucine             8.8         21           2
 M methionine          3.8          9           1
 N asparagine          2.9          7           1
 P proline            11.2         27           2
 Q glutamine           3.3          8           1
 R arginine            5.4         13           2
 S serine              9.2         22           3
 T threonine           5.0         12           1
 V valine              2.9          7           2
 W tryptophan          1.2          3           1
 Y tyrosine            4.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRY-box 14 
SOX21                 0.558   SRY-box 21 
SOX2                  0.320   sex-determining region Y-box 2 
SOX1                  0.318   SRY (sex determining region Y)-box 1 
SOX3                  0.295   SRY (sex determining region Y)-box 3 
SOX15                 0.242   SRY-box 15 
SOX17                 0.208   SRY-box 17 
SOX12                 0.206   SRY (sex determining region Y)-box 12 
SOX11                 0.204   SRY-box 11 
SRY                   0.204   sex determining region Y 
SOX4                  0.202   SRY (sex determining region Y)-box 4 
SOX8                  0.200   SRY (sex determining region Y)-box 8 
SOX9                  0.200   transcription factor SOX9 
SOX18                 0.200   SRY-box 18 
SOX10                 0.200   SRY (sex determining region Y)-box 10 
SOX7                  0.192   SRY-box 7 
SOX13                 0.173   SRY-box 13 
SOX5                  0.168   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.168   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.168   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX6                  0.158   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.158   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.158   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.158   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX30                 0.156   SRY (sex determining region Y)-box 30 isoform a [Hom...
SOX30                 0.141   SRY (sex determining region Y)-box 30 isoform b [Homo...
CIC                   0.097   capicua homolog 
BBX                   0.076   HMG-BOX transcription factor BBX isoform 1 
BBX                   0.076   HMG-BOX transcription factor BBX isoform 2 
TCF7L2                0.072   transcription factor 7-like 2 isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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