Guide to the Human Genome
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Name: SOX1 Sequence: fasta or formatted (391aa) NCBI GI: 30179900
Description:

SRY (sex determining region Y)-box 1

Referenced in:

SOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.5         80           9
 C cysteine            0.3          1           1
 D aspartate           2.0          8           1
 E glutamate           3.3         13           1
 F phenylalanine       0.5          2           1
 G glycine            16.6         65          15
 H histidine           5.6         22           2
 I isoleucine          1.3          5           1
 K lysine              4.1         16           2
 L leucine             5.6         22           2
 M methionine          4.6         18           3
 N asparagine          2.8         11           1
 P proline             8.2         32           2
 Q glutamine           3.8         15           1
 R arginine            4.3         17           2
 S serine              6.9         27           2
 T threonine           1.5          6           1
 V valine              3.6         14           1
 W tryptophan          0.8          3           1
 Y tyrosine            3.6         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRY (sex determining region Y)-box 1 
SOX3                  0.470   SRY (sex determining region Y)-box 3 
SOX2                  0.414   sex-determining region Y-box 2 
SOX21                 0.233   SRY-box 21 
SOX14                 0.194   SRY-box 14 
SOX15                 0.154   SRY-box 15 
SOX4                  0.153   SRY (sex determining region Y)-box 4 
SOX11                 0.147   SRY-box 11 
SOX17                 0.136   SRY-box 17 
SOX7                  0.134   SRY-box 7 
SRY                   0.134   sex determining region Y 
SOX8                  0.132   SRY (sex determining region Y)-box 8 
SOX10                 0.127   SRY (sex determining region Y)-box 10 
SOX9                  0.127   transcription factor SOX9 
SOX18                 0.123   SRY-box 18 
SOX12                 0.122   SRY (sex determining region Y)-box 12 
SOX5                  0.104   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.104   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.104   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX6                  0.099   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.099   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.099   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.099   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX13                 0.096   SRY-box 13 
SOX30                 0.080   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.080   SRY (sex determining region Y)-box 30 isoform a [Hom...
CIC                   0.066   capicua homolog 
ARID1A                0.050   AT rich interactive domain 1A isoform a 
ARID1A                0.050   AT rich interactive domain 1A isoform b 
BBX                   0.044   HMG-BOX transcription factor BBX isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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