Search of human proteins with 5902106

Search of human proteins with 5902106

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5902106 SRY-box 15 [Homo sapiens]
         (233 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5902106 SRY-box 15 [Homo sapiens]                                  491   e-139
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]       146   2e-35
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]       145   4e-35
gi|28195386 sex-determining region Y-box 2 [Homo sapiens]             144   5e-35
gi|5902108 SRY-box 21 [Homo sapiens]                                  144   8e-35
gi|4759162 SRY-box 14 [Homo sapiens]                                  140   1e-33
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]        128   4e-30
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]      128   4e-30
gi|4507161 SRY-box 11 [Homo sapiens]                                  124   5e-29
gi|8924248 SRY-box 18 [Homo sapiens]                                  123   2e-28
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]       122   2e-28
gi|11967991 SRY-box 17 [Homo sapiens]                                 120   1e-27
gi|13899269 SRY-box 7 [Homo sapiens]                                  117   8e-27
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]       116   1e-26
gi|4507225 sex determining region Y [Homo sapiens]                    116   2e-26
gi|4557853 transcription factor SOX9 [Homo sapiens]                   115   3e-26
gi|41406089 SRY-box 13 [Homo sapiens]                                  99   2e-21
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo...    98   7e-21
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo...    98   7e-21
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo...    98   7e-21
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo...    96   3e-20
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom...    95   4e-20
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom...    95   4e-20
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo...    95   4e-20
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom...    89   4e-18
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo...    88   5e-18
gi|112421108 capicua homolog [Homo sapiens]                            72   3e-13
gi|21361411 HMG-box transcription factor 1 [Homo sapiens]              57   1e-08
gi|71143137 high-mobility group box 3 [Homo sapiens]                   57   1e-08
gi|169212060 PREDICTED: high mobility group protein B3-like prot...    56   3e-08

>gi|5902106 SRY-box 15 [Homo sapiens]
          Length = 233

 Score =  491 bits (1263), Expect = e-139
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS 60
           MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS
Sbjct: 1   MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS 60

Query: 61  SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP 120
           SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP
Sbjct: 61  SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP 120

Query: 121 RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS 180
           RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS
Sbjct: 121 RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS 180

Query: 181 HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL 233
           HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
Sbjct: 181 HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL 233


>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
          Length = 446

 Score =  146 bits (368), Expect = 2e-35
 Identities = 91/224 (40%), Positives = 116/224 (51%), Gaps = 20/224 (8%)

Query: 18  AATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNS 77
           +A AA  ++SG     GA      G    ++VKRPMNAFMVWS  QRR+MA +NPKMHNS
Sbjct: 110 SANAAGGANSGGGSSGGASGGG--GGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNS 167

Query: 78  EISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS----------- 126
           EISKRLGA WKLL + EKRPF++EAKRLRA H+++YPDYKYRPRRK K+           
Sbjct: 168 EISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLPS 227

Query: 127 ----SGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHC 182
                GA  +         A+  P+ G G      +   G+   +YS       Y     
Sbjct: 228 GLLPPGAAAAAAAAAAAAAAASSPV-GVGQRLDTYTHVNGWANGAYSLVQEQLGYAQPPS 286

Query: 183 KLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGA 226
               P P +LP         L   Y+  +PPG+ +  N   A A
Sbjct: 287 MSSPPPPPALPPMHRYDMAGL--QYSPMMPPGAQSYMNVAAAAA 328


>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
          Length = 391

 Score =  145 bits (365), Expect = 4e-35
 Identities = 94/236 (39%), Positives = 118/236 (50%), Gaps = 37/236 (15%)

Query: 14  LEPPAATAAASSSSGPQEREGAGSPAAPG------TLPLEKVKRPMNAFMVWSSAQRRQM 67
           L  P    A ++ SGP    G G     G          ++VKRPMNAFMVWS  QRR+M
Sbjct: 10  LHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVWSRGQRRKM 69

Query: 68  AQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAK-- 125
           AQ+NPKMHNSEISKRLGA+WK++ E EKRPF++EAKRLRA H++++PDYKYRPRRK K  
Sbjct: 70  AQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTL 129

Query: 126 -------------SSGAGPSRC------GQGRGNLASGGPLWGPGYATTQPSRGFGY-RP 165
                        ++GAG          G G G  A G  L  PG A      G GY   
Sbjct: 130 LKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAA-----GGGYAHV 184

Query: 166 PSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNP 221
             ++    PGS  ++           L        G   P    +  P  P P++P
Sbjct: 185 NGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHP----HAHPAHPHPHHP 236


>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
          Length = 317

 Score =  144 bits (364), Expect = 5e-35
 Identities = 86/170 (50%), Positives = 103/170 (60%), Gaps = 11/170 (6%)

Query: 28  GPQEREGAG-----SPAAPGTLPL--EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEIS 80
           GPQ+  G G     + AA G      ++VKRPMNAFMVWS  QRR+MAQ+NPKMHNSEIS
Sbjct: 13  GPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEIS 72

Query: 81  KRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGN 140
           KRLGA+WKLL E EKRPF++EAKRLRA H++++PDYKYRPRRK K+          G G 
Sbjct: 73  KRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPG-GL 131

Query: 141 LASGGPLWGPGYAT-TQPSRGFGYRPPSYS--TAYLPGSYGSSHCKLEAP 187
           LA GG     G         G   R  SY+    +  GSY     +L  P
Sbjct: 132 LAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYP 181


>gi|5902108 SRY-box 21 [Homo sapiens]
          Length = 276

 Score =  144 bits (362), Expect = 8e-35
 Identities = 64/82 (78%), Positives = 76/82 (92%)

Query: 45  PLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKR 104
           P++ VKRPMNAFMVWS AQRR+MAQ+NPKMHNSEISKRLGA+WKLL E EKRPF++EAKR
Sbjct: 4   PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63

Query: 105 LRARHLRDYPDYKYRPRRKAKS 126
           LRA H++++PDYKYRPRRK K+
Sbjct: 64  LRAMHMKEHPDYKYRPRRKPKT 85


>gi|4759162 SRY-box 14 [Homo sapiens]
          Length = 240

 Score =  140 bits (352), Expect = 1e-33
 Identities = 61/82 (74%), Positives = 75/82 (91%)

Query: 45  PLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKR 104
           P + +KRPMNAFMVWS  QRR+MAQ+NPKMHNSEISKRLGA+WKLL E EKRP+++EAKR
Sbjct: 4   PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63

Query: 105 LRARHLRDYPDYKYRPRRKAKS 126
           LRA+H++++PDYKYRPRRK K+
Sbjct: 64  LRAQHMKEHPDYKYRPRRKPKN 85


>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
          Length = 474

 Score =  128 bits (322), Expect = 4e-30
 Identities = 72/170 (42%), Positives = 90/170 (52%), Gaps = 25/170 (14%)

Query: 18  AATAAASSSSGPQEREGAGSPAAPGTL---------------PLEKVKRPMNAFMVWSSA 62
           A  A  SS SG     G  S   PG+                P   +KRPMNAFMVWS  
Sbjct: 13  ALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQI 72

Query: 63  QRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRR 122
           +RR++ +Q+P MHN+EISKRLG +WKLL + +K PF+ EA+RLR +H+ DYPDYKYRPR+
Sbjct: 73  ERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRK 132

Query: 123 KAKSSGAG----------PSRCGQGRGNLASGGPLWGPGYATTQPSRGFG 162
           K KS  A           P   G   G    GG   G G  ++    G G
Sbjct: 133 KVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGG 182


>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
          Length = 315

 Score =  128 bits (322), Expect = 4e-30
 Identities = 72/140 (51%), Positives = 88/140 (62%), Gaps = 21/140 (15%)

Query: 28  GPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQW 87
           GP E EGA  P    T P   +KRPMNAFMVWS  +RR++  Q P MHN+EISKRLG +W
Sbjct: 21  GPAE-EGAREPGWCKT-PSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRW 78

Query: 88  KLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGA------------------ 129
           +LL + EK PFV EA+RLR +H+ DYPDYKYRPR+K+K + A                  
Sbjct: 79  QLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKP 138

Query: 130 GPSRCGQGRGNLASGGPLWG 149
           GP   G+G G  A+GGPL G
Sbjct: 139 GPQLPGRG-GRRAAGGPLGG 157


>gi|4507161 SRY-box 11 [Homo sapiens]
          Length = 441

 Score =  124 bits (312), Expect = 5e-29
 Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 10/114 (8%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           +KRPMNAFMVWS  +RR++ +Q+P MHN+EISKRLG +WK+L + EK PF+ EA+RLR +
Sbjct: 49  IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLK 108

Query: 109 HLRDYPDYKYRPRRKAK-------SSGAGPSRCGQGRGNLASGGPLWGPGYATT 155
           H+ DYPDYKYRPR+K K       S+   P +   G G  ++GG   G G A T
Sbjct: 109 HMADYPDYKYRPRKKPKMDPSAKPSASQSPEKSAAGGGGGSAGG---GAGGAKT 159


>gi|8924248 SRY-box 18 [Homo sapiens]
          Length = 384

 Score =  123 bits (308), Expect = 2e-28
 Identities = 73/176 (41%), Positives = 98/176 (55%), Gaps = 14/176 (7%)

Query: 5   GSSQDQAWSLEPPAATAA-ASSSSGPQEREGAGSPAAPGTLPLE-------------KVK 50
           G++ D       PAA AA A+ +S P  +        PG   L              +++
Sbjct: 27  GAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAGRGERQAADESRIR 86

Query: 51  RPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHL 110
           RPMNAFMVW+  +R+++AQQNP +HN+ +SK LG  WK L+  EKRPFVEEA+RLR +HL
Sbjct: 87  RPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHL 146

Query: 111 RDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPP 166
           RD+P+YKYRPRRK ++  A     G     LA   P   P  A +  +R F   PP
Sbjct: 147 RDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPP 202


>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
          Length = 446

 Score =  122 bits (307), Expect = 2e-28
 Identities = 81/204 (39%), Positives = 103/204 (50%), Gaps = 37/204 (18%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           VKRPMNAFMVW+ A RR++A Q P +HN+E+SK LG  W+LL E EKRPFVEEA+RLR +
Sbjct: 102 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 161

Query: 109 HLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFG------ 162
           H +D+PDYKY+PRR+ KS+ AG S    G    A  GP  G G A  +   G G      
Sbjct: 162 HKKDHPDYKYQPRRR-KSAKAGHSDSDSG----AELGPHPGGG-AVYKAEAGLGDGHHHG 215

Query: 163 ---------YRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSD--------PRLQGELLP 205
                      PP+     L  +      KLE   P    + +          L  E++ 
Sbjct: 216 DHTGQTHGPPTPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELSSEVMG 275

Query: 206 T--------YTHYLPPGSPTPYNP 221
           T        +  YLP G P P  P
Sbjct: 276 TMDAFDVHEFDQYLPLGGPAPPEP 299


>gi|11967991 SRY-box 17 [Homo sapiens]
          Length = 414

 Score =  120 bits (300), Expect = 1e-27
 Identities = 81/207 (39%), Positives = 105/207 (50%), Gaps = 28/207 (13%)

Query: 34  GAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDED 93
           GA + AA       +++RPMNAFMVW+  +R+++AQQNP +HN+E+SK LG  WK L   
Sbjct: 53  GAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLA 112

Query: 94  EKRPFVEEAKRLRARHLRDYPDYKYRPRR----KAKSSGAGPSRCGQGRGNLASGGPLWG 149
           EKRPFVEEA+RLR +H++D+P+YKYRPRR    K      G    G      A+ GP  G
Sbjct: 113 EKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGG 172

Query: 150 ----PGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLP 205
                G     P +GF   PP      LP   G  +   ++          P L G  LP
Sbjct: 173 RVAMDGLGLQFPEQGFPAGPP-----LLPPHMGGHYRDCQS-------LGAPPLDGYPLP 220

Query: 206 TYTHYLPPGSP---TPYNPPLAGAPMP 229
           T     P  SP      +P    APMP
Sbjct: 221 T-----PDTSPLDGVDPDPAFFAAPMP 242


>gi|13899269 SRY-box 7 [Homo sapiens]
          Length = 388

 Score =  117 bits (293), Expect = 8e-27
 Identities = 88/258 (34%), Positives = 117/258 (45%), Gaps = 55/258 (21%)

Query: 14  LEPPAATAAASSSSGPQEREGAGSPAAPGTLPLE-KVKRPMNAFMVWSSAQRRQMAQQNP 72
           LE PA  A  S    P        P  PG    E +++RPMNAFMVW+  +R+++A QNP
Sbjct: 14  LECPALDAELSDGQSPP-----AVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNP 68

Query: 73  KMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK--------- 123
            +HN+E+SK LG  WK L   +KRP+V+EA+RLR +H++DYP+YKYRPRRK         
Sbjct: 69  DLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKR 128

Query: 124 ----------AKSSGAGPSRCGQGRGNLASGGPL--WGPGYATTQ--------PSRGFGY 163
                     ++   A P +    RG L        + PG A           P+ G G 
Sbjct: 129 VDPGFLLSSLSRDQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGG 188

Query: 164 RPPSYSTAY---LPGSYGSSHCKLEAP------SPCSLPQSDPRLQGELLPTYTHYLPPG 214
             PS    Y   LP     S   +  P      SPC      PR    L         PG
Sbjct: 189 GTPSSVDTYPYGLPTPPEMSPLDVLEPEQTFFSSPCQEEHGHPRRIPHL---------PG 239

Query: 215 SPTPYNPPLAGAPMPLTH 232
              PY+P  A +P+  +H
Sbjct: 240 H--PYSPEYAPSPLHCSH 255


>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
          Length = 466

 Score =  116 bits (291), Expect = 1e-26
 Identities = 52/90 (57%), Positives = 69/90 (76%), Gaps = 1/90 (1%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           VKRPMNAFMVW+ A RR++A Q P +HN+E+SK LG  W+LL+E +KRPF+EEA+RLR +
Sbjct: 104 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQ 163

Query: 109 HLRDYPDYKYRPRRKAKSSGA-GPSRCGQG 137
           H +D+PDYKY+PRR+     A G + C  G
Sbjct: 164 HKKDHPDYKYQPRRRKNGKAAQGEAECPGG 193


>gi|4507225 sex determining region Y [Homo sapiens]
          Length = 204

 Score =  116 bits (290), Expect = 2e-26
 Identities = 53/79 (67%), Positives = 66/79 (83%)

Query: 47  EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLR 106
           ++VKRPMNAF+VWS  QRR+MA +NP+M NSEISK+LG QWK+L E EK PF +EA++L+
Sbjct: 58  DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 117

Query: 107 ARHLRDYPDYKYRPRRKAK 125
           A H   YP+YKYRPRRKAK
Sbjct: 118 AMHREKYPNYKYRPRRKAK 136


>gi|4557853 transcription factor SOX9 [Homo sapiens]
          Length = 509

 Score =  115 bits (288), Expect = 3e-26
 Identities = 50/75 (66%), Positives = 64/75 (85%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           VKRPMNAFMVW+ A RR++A Q P +HN+E+SK LG  W+LL+E EKRPFVEEA+RLR +
Sbjct: 105 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQ 164

Query: 109 HLRDYPDYKYRPRRK 123
           H +D+PDYKY+PRR+
Sbjct: 165 HKKDHPDYKYQPRRR 179


>gi|41406089 SRY-box 13 [Homo sapiens]
          Length = 622

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 36  GSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEK 95
           GS   P +     +KRPMNAFMVW+  +RR++ Q  P MHNS ISK LG++WK +   EK
Sbjct: 411 GSRHFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEK 470

Query: 96  RPFVEEAKRLRARHLRDYPDYKYRPRRK 123
           +P+ EE  RL  +HL  YPDYKY+PR K
Sbjct: 471 QPYYEEQARLSRQHLEKYPDYKYKPRPK 498


>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
           sapiens]
          Length = 377

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 50/104 (48%), Positives = 64/104 (61%), Gaps = 7/104 (6%)

Query: 20  TAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEI 79
           +A  S S   +E  G GS           +KRPMNAFMVW+  +RR++ Q  P MHNS I
Sbjct: 148 SAGVSESRIYRESRGRGSNEP-------HIKRPMNAFMVWAKDERRKILQAFPDMHNSNI 200

Query: 80  SKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123
           SK LG++WK +   EK+P+ EE  RL  +HL  YPDYKY+PR K
Sbjct: 201 SKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 244


>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
           sapiens]
          Length = 750

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 50/104 (48%), Positives = 64/104 (61%), Gaps = 7/104 (6%)

Query: 20  TAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEI 79
           +A  S S   +E  G GS           +KRPMNAFMVW+  +RR++ Q  P MHNS I
Sbjct: 521 SAGVSESRIYRESRGRGSNEP-------HIKRPMNAFMVWAKDERRKILQAFPDMHNSNI 573

Query: 80  SKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123
           SK LG++WK +   EK+P+ EE  RL  +HL  YPDYKY+PR K
Sbjct: 574 SKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 617


>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
           sapiens]
          Length = 763

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 50/104 (48%), Positives = 64/104 (61%), Gaps = 7/104 (6%)

Query: 20  TAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEI 79
           +A  S S   +E  G GS           +KRPMNAFMVW+  +RR++ Q  P MHNS I
Sbjct: 534 SAGVSESRIYRESRGRGSNEP-------HIKRPMNAFMVWAKDERRKILQAFPDMHNSNI 586

Query: 80  SKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123
           SK LG++WK +   EK+P+ EE  RL  +HL  YPDYKY+PR K
Sbjct: 587 SKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 630


>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
           sapiens]
          Length = 808

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 49/103 (47%), Positives = 64/103 (62%), Gaps = 8/103 (7%)

Query: 29  PQEREGAGSPA-------APGTLPLEK-VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEIS 80
           P++ EG  + A       A G    E  +KRPMNAFMVW+  +RR++ Q  P MHNS IS
Sbjct: 573 PEDAEGGATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNIS 632

Query: 81  KRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123
           K LG++WK +   EK+P+ EE  RL   HL  YP+YKY+PR K
Sbjct: 633 KILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 675


>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
           sapiens]
          Length = 841

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 42/75 (56%), Positives = 54/75 (72%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           +KRPMNAFMVW+  +RR++ Q  P MHNS ISK LG++WK +   EK+P+ EE  RL   
Sbjct: 634 IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI 693

Query: 109 HLRDYPDYKYRPRRK 123
           HL  YP+YKY+PR K
Sbjct: 694 HLEKYPNYKYKPRPK 708


>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
           sapiens]
          Length = 801

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 42/75 (56%), Positives = 54/75 (72%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           +KRPMNAFMVW+  +RR++ Q  P MHNS ISK LG++WK +   EK+P+ EE  RL   
Sbjct: 594 IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI 653

Query: 109 HLRDYPDYKYRPRRK 123
           HL  YP+YKY+PR K
Sbjct: 654 HLEKYPNYKYKPRPK 668


>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
           sapiens]
          Length = 804

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 42/75 (56%), Positives = 54/75 (72%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           +KRPMNAFMVW+  +RR++ Q  P MHNS ISK LG++WK +   EK+P+ EE  RL   
Sbjct: 597 IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI 656

Query: 109 HLRDYPDYKYRPRRK 123
           HL  YP+YKY+PR K
Sbjct: 657 HLEKYPNYKYKPRPK 671


>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
           sapiens]
          Length = 753

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 22/178 (12%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           VKRPMNAFMVW+   R  +A+ NP  +N+EIS +LG +W  L E++K+P+ +EA++++ +
Sbjct: 337 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396

Query: 109 HLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSY 168
           H  ++P + Y+PR   +       R      N+ SG         +T P+  + YR P+Y
Sbjct: 397 HREEFPGWVYQPRPGKR------KRFPLSVSNVFSGTT---QNIISTNPTTVYPYRSPTY 447

Query: 169 STAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGA 226
           S   +P         L+ P    + ++ P +Q   LPT      P   T + P ++ A
Sbjct: 448 SVV-IP--------SLQNPITHPVGETSPAIQ---LPT-PAVQSPSPVTLFQPSVSSA 492


>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
           sapiens]
          Length = 501

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 9/121 (7%)

Query: 49  VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
           VKRPMNAFMVW+   R  +A+ NP  +N+EIS +LG +W  L E++K+P+ +EA++++ +
Sbjct: 337 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396

Query: 109 HLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSY 168
           H  ++P + Y+PR   +       R      N+ SG         +T P+  + YR P+Y
Sbjct: 397 HREEFPGWVYQPRPGKR------KRFPLSVSNVFSGTT---QNIISTNPTTVYPYRSPTY 447

Query: 169 S 169
           S
Sbjct: 448 S 448


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 16  PPAATAAASSSSGPQEREGAGSP--AAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPK 73
           PP      S S+ P+ER+ +      +P     + ++RPMNAFM++S   R  + Q++P 
Sbjct: 165 PPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPN 224

Query: 74  MHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKY-RPRRKAKSSGAGPS 132
             N  +SK LG  W  L   EK+ + + A +++  H + +PD+K+    RK  SS A P+
Sbjct: 225 QDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPT 284

Query: 133 RCGQGRGN 140
             G   G+
Sbjct: 285 SLGLAGGH 292


>gi|21361411 HMG-box transcription factor 1 [Homo sapiens]
          Length = 514

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 4   PGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQ 63
           PGSSQ  + SL    A A  + SSG      A SP         K KRPMNAFM+++   
Sbjct: 403 PGSSQLSSNSLY---AKAVKNHSSGTVS---ATSP--------NKCKRPMNAFMLFAKKY 448

Query: 64  RRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123
           R +  Q  P   N  IS  LG +WK +  +E+R +  EAK L     R  PD   R R  
Sbjct: 449 RVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTN 508

Query: 124 AKS 126
           + S
Sbjct: 509 SGS 511


>gi|71143137 high-mobility group box 3 [Homo sapiens]
          Length = 200

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 50  KRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARH 109
           KRP + F ++ S  R ++   NP +   +++K+LG  W  L++ EK+P++ +A +L+ ++
Sbjct: 94  KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153

Query: 110 LRDYPDYKYRPRRKAKSSGA-GPSR 133
            +D  DYK     K K  GA GP++
Sbjct: 154 EKDVADYK----SKGKFDGAKGPAK 174



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 47  EKVKRPMNAFMVWSSAQRRQMAQQNPKM--HNSEISKRLGAQWKLLDEDEKRPFVEEAKR 104
           +K K  M+A+  +    R +  ++NP++  + +E SK+   +WK +   EK  F E AK 
Sbjct: 7   KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKA 66

Query: 105 LRARHLRDYPDYKYRPRRKAKSSGAGPSR--------CGQGRGNLASGGP 146
            + R+ R+  DY      K K     P R        C + R  + S  P
Sbjct: 67  DKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP 116


>gi|169212060 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 13/110 (11%)

Query: 28  GPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQW 87
           GP +      P AP        KRP + F ++ S    +    NP +   +++K+LG  W
Sbjct: 79  GPAKGGKKKDPNAP--------KRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMW 130

Query: 88  KLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGA-GPSRCGQ 136
           K L++ EK+P++ +A +L+ ++ +D   YK     K KS GA GP++  Q
Sbjct: 131 KNLNDSEKQPYITQAAKLKEKYEKDVAVYK----SKGKSDGAKGPAKVAQ 176



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 47  EKVKRPMNAFMVWSSAQRRQMAQQNPKM--HNSEISKRLGAQWKLLDEDEKRPFVEEAKR 104
           +K K  M+A+  +    R +  ++NPK+  + +E SK+   +WK + + EK  F E AK 
Sbjct: 7   KKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKA 66

Query: 105 LRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQG 137
            +  + ++  DY      K K   A P R   G
Sbjct: 67  DKVHYDQEIKDYGPAKGGKKKDPNA-PKRPPSG 98


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.130    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,002,299
Number of Sequences: 37866
Number of extensions: 808551
Number of successful extensions: 4783
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 4307
Number of HSP's gapped (non-prelim): 733
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.