HMGB3 35175

Name: HMGB3	Sequence: fasta or formatted (200aa)		NCBI GI: 71143137
Description: high-mobility group box 3		Referenced in: Nonhistone Chromosomal Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 15 2 C cysteine 1.5 3 1 D aspartate 6.5 13 1 E glutamate 15.5 31 14 F phenylalanine 5.0 10 2 G glycine 6.5 13 2 H histidine 0.5 1 1 I isoleucine 2.0 4 1 K lysine 20.0 40 4 L leucine 2.0 4 1 M methionine 3.0 6 1 N asparagine 3.5 7 2 P proline 6.5 13 2 Q glutamine 1.0 2 1 R arginine 3.5 7 1 S serine 5.5 11 1 T threonine 2.0 4 1 V valine 4.0 8 1 W tryptophan 1.0 2 1 Y tyrosine 3.0 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 high-mobility group box 3 LOC646993 0.872 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.872 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.862 PREDICTED: similar to high mobility group box 3 [Ho... LOC441795 0.836 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.836 PREDICTED: high mobility group protein B3-like prot... LOC203510 0.810 PREDICTED: similar to hCG1644442 LOC203510 0.810 PREDICTED: similar to hCG1644442 LOC203510 0.810 PREDICTED: hypothetical protein LOC203510 LOC729595 0.800 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.800 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.800 PREDICTED: similar to high mobility group box 3 iso... HMGB1 0.733 high-mobility group box 1 HMGB2 0.726 high-mobility group box 2 HMGB2 0.726 high-mobility group box 2 HMGB2 0.726 high-mobility group box 2 HMGB1L1 0.690 high-mobility group box 1-like 1 LOC729595 0.636 PREDICTED: similar to high mobility group box 3 iso... SP100 0.528 nuclear antigen Sp100 isoform 2 LOC645490 0.510 PREDICTED: similar to hCG1991922 LOC645490 0.510 PREDICTED: similar to hCG1991922 LOC645490 0.508 PREDICTED: similar to hCG1991922 HMGB4 0.305 HMG2 like isoform 1 LOC644129 0.267 PREDICTED: similar to hCG1647425 LOC644129 0.267 PREDICTED: similar to hCG1647425 LOC644129 0.226 PREDICTED: similar to hCG1647425 SSRP1 0.154 structure specific recognition protein 1 LOC645101 0.146 PREDICTED: similar to high-mobility group box 2 [Ho... LOC645101 0.146 PREDICTED: similar to high-mobility group box 2 [Ho... LOC645101 0.146 PREDICTED: similar to high-mobility group box 2 [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.