HBP1 12959

Name: HBP1	Sequence: fasta or formatted (514aa)		NCBI GI: 21361411
Description: HMG-box transcription factor 1		Referenced in: SOX Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 25 1 C cysteine 3.1 16 2 D aspartate 6.2 32 4 E glutamate 6.6 34 2 F phenylalanine 3.5 18 1 G glycine 6.0 31 2 H histidine 3.5 18 3 I isoleucine 2.1 11 2 K lysine 6.0 31 2 L leucine 7.6 39 3 M methionine 3.1 16 1 N asparagine 5.1 26 1 P proline 6.0 31 3 Q glutamine 4.1 21 2 R arginine 4.3 22 2 S serine 12.8 66 4 T threonine 4.3 22 2 V valine 5.4 28 2 W tryptophan 2.1 11 1 Y tyrosine 3.1 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 HMG-box transcription factor 1 CIC 0.037 capicua homolog SOX13 0.034 SRY-box 13 SOX5 0.033 SRY (sex determining region Y)-box 5 isoform c [Homo... SOX5 0.033 SRY (sex determining region Y)-box 5 isoform b [Homo... SOX5 0.033 SRY (sex determining region Y)-box 5 isoform a [Homo... SOX6 0.032 SRY (sex determining region Y)-box 6 isoform 4 [Hom... SOX6 0.032 SRY (sex determining region Y)-box 6 isoform 3 [Hom... SOX6 0.032 SRY (sex determining region Y)-box 6 isoform 1 [Homo... SOX6 0.032 SRY (sex determining region Y)-box 6 isoform 2 [Homo... SOX15 0.030 SRY-box 15 SOX2 0.029 sex-determining region Y-box 2 SOX9 0.029 transcription factor SOX9 SOX18 0.028 SRY-box 18 SOX8 0.028 SRY (sex determining region Y)-box 8 BBX 0.028 HMG-BOX transcription factor BBX isoform 1 BBX 0.028 HMG-BOX transcription factor BBX isoform 2 SOX14 0.026 SRY-box 14 SOX30 0.026 SRY (sex determining region Y)-box 30 isoform b [Homo... SOX30 0.026 SRY (sex determining region Y)-box 30 isoform a [Hom... SOX10 0.026 SRY (sex determining region Y)-box 10 ATXN1 0.025 ataxin 1 ATXN1 0.025 ataxin 1 SOX1 0.025 SRY (sex determining region Y)-box 1 SOX3 0.025 SRY (sex determining region Y)-box 3 SOX17 0.024 SRY-box 17 SOX11 0.024 SRY-box 11 SOX21 0.024 SRY-box 21 UBTFL3 0.021 PREDICTED: upstream binding transcription factor, R... UBTFL5 0.021 PREDICTED: upstream binding transcription factor, R... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.