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Search of human proteins with 5902104
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
(466 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 976 0.0
gi|4557853 transcription factor SOX9 [Homo sapiens] 493 e-139
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 361 e-100
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 129 7e-30
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 127 2e-29
gi|11967991 SRY-box 17 [Homo sapiens] 124 1e-28
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 124 1e-28
gi|5902108 SRY-box 21 [Homo sapiens] 123 3e-28
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 121 1e-27
gi|8924248 SRY-box 18 [Homo sapiens] 121 2e-27
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 120 2e-27
gi|4759162 SRY-box 14 [Homo sapiens] 120 3e-27
gi|13899269 SRY-box 7 [Homo sapiens] 119 4e-27
gi|5902106 SRY-box 15 [Homo sapiens] 116 4e-26
gi|4507161 SRY-box 11 [Homo sapiens] 115 8e-26
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo... 100 4e-21
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 100 4e-21
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 100 4e-21
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 97 2e-20
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 97 2e-20
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 97 2e-20
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 97 2e-20
gi|41406089 SRY-box 13 [Homo sapiens] 97 2e-20
gi|4507225 sex determining region Y [Homo sapiens] 95 2e-19
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo... 82 8e-16
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom... 82 8e-16
gi|112421108 capicua homolog [Homo sapiens] 67 3e-11
gi|13786123 HMG-box transcription factor TCF-3 [Homo sapiens] 65 1e-10
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 59 1e-08
gi|71143137 high-mobility group box 3 [Homo sapiens] 59 1e-08
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 976 bits (2524), Expect = 0.0
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD 60
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
Sbjct: 1 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD 60
Query: 61 GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR 120
GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
Sbjct: 61 GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR 120
Query: 121 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN 180
KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
Sbjct: 121 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN 180
Query: 181 GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT 240
GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT
Sbjct: 181 GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT 240
Query: 241 PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY 300
PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY
Sbjct: 241 PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY 300
Query: 301 LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET 360
LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
Sbjct: 301 LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET 360
Query: 361 AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG 420
AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG
Sbjct: 361 AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG 420
Query: 421 LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP 466
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
Sbjct: 421 LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP 466
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 493 bits (1269), Expect = e-139
Identities = 273/502 (54%), Positives = 324/502 (64%), Gaps = 58/502 (11%)
Query: 18 EEPRCLSPGSAPSLGPDGGGG----GSGLRASPGPGELGKVKKEQQD--GEADDDKFPVC 71
E+ + LS +P++ D G GSG + K + D E+++DKFPVC
Sbjct: 13 EQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDLKKESEEDKFPVC 72
Query: 72 IREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHN 131
IREAVSQVL GYDWTLVPMPVRVNG+SK+KPHVKRPMNAFMVWAQAARRKLADQYPHLHN
Sbjct: 73 IREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHN 132
Query: 132 AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECP 191
AELSKTLGKLWRLLNES+KRPF+EEAERLR+QHKKDHPDYKYQPRRRK+ K Q EAE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEAE-- 190
Query: 192 GGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQS 251
EA + + A +K+ D H G EH SGQS GPPTPPTTPKT++Q
Sbjct: 191 --EATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEH-SGQSQGPPTPPTTPKTDVQP 247
Query: 252 GKADPKRDGRSMGEGGK-PHIDFGNVDIGEISHEVMSNMETFDVAELDQYLPPNGHPG-- 308
GKAD KR+GR + EGG+ P IDF +VDIGE+S +V+SN+ETFDV E DQYLPPNGHPG
Sbjct: 248 GKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPNGHPGVP 307
Query: 309 --HVSSYSAAGYGLGSALAV-ASGHSAWISK----PPGVALPTVSPPGVDAKAQVKT--- 358
H YG+ S A AS W+SK PP P +PP A Q +
Sbjct: 308 ATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAPPQPQAAPP 367
Query: 359 --ETAGPQ---------------------------GPPHYTDQP--STSQIAYTSLSLPH 387
A PQ P HY++Q S QIAY+ +LPH
Sbjct: 368 QQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPH 427
Query: 388 YGSAFPSISRPQFDYSDHQPSGPYYGH-SGQASGLYSAFSYMGPSQRPLYTAISDPS--P 444
Y ++P I+R Q+DY+DHQ S YY H +GQ +GLYS F+YM P+QRP+YT I+D S P
Sbjct: 428 YSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQRPMYTPIADTSGVP 487
Query: 445 SGPQSHSPTHWEQPVYTTLSRP 466
S PQ+HSP HWEQPVYT L+RP
Sbjct: 488 SIPQTHSPQHWEQPVYTQLTRP 509
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 361 bits (926), Expect = e-100
Identities = 228/477 (47%), Positives = 273/477 (57%), Gaps = 69/477 (14%)
Query: 19 EPRCLSPGSAPSLG---------PDGGGGGSGLRASPGPGELGKVKKEQQDGEADDDKFP 69
+P C G+A S+ P G GL G + EA D++FP
Sbjct: 10 QPPCSPSGTASSMSHVEDSDSDAPPSPAGSEGL----GRAGVAVGGARGDPAEAADERFP 65
Query: 70 VCIREAVSQVLSGYDWTLVPMPVRVNG--ASKSKPHVKRPMNAFMVWAQAARRKLADQYP 127
CIR+AVSQVL GYDW+LVPMPVR G A K+KPHVKRPMNAFMVWAQAARRKLADQYP
Sbjct: 66 ACIRDAVSQVLKGYDWSLVPMPVRGGGGGALKAKPHVKRPMNAFMVWAQAARRKLADQYP 125
Query: 128 HLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGE 187
HLHNAELSKTLGKLWRLL+ES+KRPF+EEAERLR+QHKKDHPDYKYQPRRRK+ KA +
Sbjct: 126 HLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSAKAGHSD 185
Query: 188 AECPGGE--AEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTP 245
++ G E GG A +A ++ D H G+ +GQ+HGPPTPPTTP
Sbjct: 186 SD-SGAELGPHPGGGAVYKA--EAGLGDGHHHGD-----------HTGQTHGPPTPPTTP 231
Query: 246 KTELQSGKADP--KRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQYLPP 303
KTELQ A P K +GR + G+ +IDF NVDI E+S EVM M+ FDV E DQYLP
Sbjct: 232 KTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELSSEVMGTMDAFDVHEFDQYLPL 291
Query: 304 NGHPGHVSSYSAAGYGLGSALAVASGHSAWISK--PPGVALPTVSPPGVDAKAQVKTETA 361
G + G G A A W K P A PT + P + +KTE
Sbjct: 292 GG-----PAPPEPGQAYGGAYFHAGASPVWAHKSAPSASASPTETGP---PRPHIKTE-- 341
Query: 362 GPQGPPHYTDQPSTSQIAYTSLSLPHYG------SAFPS-----ISRPQFDYSDHQPSGP 410
P HY DQP S P YG SA P+ + Q DY D Q S
Sbjct: 342 -QPSPGHYGDQPRGS---------PDYGSCSGQSSATPAAPAGPFAGSQGDYGDLQASSY 391
Query: 411 YYGHSGQASGLYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPT-HWEQPVYTTLSRP 466
Y + G A GLY + P +RP + + + + P +HSPT HW+QPVYTTL+RP
Sbjct: 392 YGAYPGYAPGLYQYPCFHSP-RRPYASPLLN-GLALPPAHSPTSHWDQPVYTTLTRP 446
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 129 bits (323), Expect = 7e-30
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 17/159 (10%)
Query: 96 GASKSKP-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFI 154
G K+ P VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI
Sbjct: 32 GNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFI 91
Query: 155 EEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGT-------------A 201
+EA+RLR H K+HPDYKY+PRR+ + + PGG GG A
Sbjct: 92 DEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGA 151
Query: 202 AIQAHYKS-AHLDHRHPGEGSPMSD--GNPEHPSGQSHG 237
+ S AH++ G S M D G P+HP +HG
Sbjct: 152 GVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHG 190
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 127 bits (319), Expect = 2e-29
Identities = 60/126 (47%), Positives = 83/126 (65%), Gaps = 10/126 (7%)
Query: 103 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
H+KRPMNAFMVW+Q RRK+ DQ+P +HNAE+SK LG+ W+LL +S+K PF+ EAERLR+
Sbjct: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
Query: 163 QHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSP 222
+H D+PDYKY+PR++ G A+ PGG GG + ++ + PG G
Sbjct: 99 KHMADYPDYKYRPRKKSKGAPAKARPRPPGG---SGGGSRLKP-------GPQLPGRGGR 148
Query: 223 MSDGNP 228
+ G P
Sbjct: 149 RAAGGP 154
Score = 29.3 bits (64), Expect = 8.0
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 24 SPGSAPSLGPDGGGGGS------------GLRASPGPGELGKVKKEQQDGEADDDKFPVC 71
+P A P G GGGS G RA+ GP G E D + D++ V
Sbjct: 118 APAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVR 177
Query: 72 IREAVSQVLSGYDWTLVP 89
+ E + L W +VP
Sbjct: 178 LVETPGREL----WRMVP 191
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 124 bits (312), Expect = 1e-28
Identities = 56/92 (60%), Positives = 71/92 (77%)
Query: 91 PVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDK 150
P G +K + ++RPMNAFMVWA+ R++LA Q P LHNAELSK LGK W+ L ++K
Sbjct: 55 PAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEK 114
Query: 151 RPFIEEAERLRMQHKKDHPDYKYQPRRRKNGK 182
RPF+EEAERLR+QH +DHP+YKY+PRRRK K
Sbjct: 115 RPFVEEAERLRVQHMQDHPNYKYRPRRRKQVK 146
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 124 bits (312), Expect = 1e-28
Identities = 98/329 (29%), Positives = 138/329 (41%), Gaps = 96/329 (29%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
GA ++ VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W++++E++KRPFI+
Sbjct: 43 GAKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFID 102
Query: 156 EAERLRMQHKKDHPDYKYQPRRRKN----------------------------------G 181
EA+RLR H K+HPDYKY+PRR+ G
Sbjct: 103 EAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVG 162
Query: 182 KAAQGE-AECPGGEAEQG-----------------GTAAIQAHYKSAHLDH-RHPGEGSP 222
AA G+ E PGG A G AA A + A L + +HPG G
Sbjct: 163 AAAVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGA 222
Query: 223 MSDGNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEIS 282
+P HP H P P P+ D+G +
Sbjct: 223 HPHAHPAHP--HPHHPHAHPHNPQ-------------------------PMHRYDMGALQ 255
Query: 283 HEVMSNMETFDVAELDQYLPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVAL 342
+ +SN + + A P+G Y YG +A A A+G + S A
Sbjct: 256 YSPISNSQGYMSAS------PSG-------YGGLPYGAAAAAAAAAGGAHQNSAVAAAAA 302
Query: 343 PTVSPPGV--DAKAQVKTETAG-PQGPPH 368
+ G + VK+E +G P P H
Sbjct: 303 AAAASSGALGALGSLVKSEPSGSPPAPAH 331
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 123 bits (309), Expect = 3e-28
Identities = 84/251 (33%), Positives = 118/251 (47%), Gaps = 20/251 (7%)
Query: 98 SKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEA 157
SK HVKRPMNAFMVW++A RRK+A + P +HN+E+SK LG W+LL ES+KRPFI+EA
Sbjct: 2 SKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEA 61
Query: 158 ERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHP 217
+RLR H K+HPDYKY+PRR+ + + P G A K+ H
Sbjct: 62 KRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAGA 121
Query: 218 GEGSPMSD--GNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGN 275
G G NPE + + P++ + A + G P +
Sbjct: 122 GGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAA------AAAAAAGSP---YSL 172
Query: 276 VDIGEISHEVMSNMETFDVAELDQYLPPNGHP-GHVSSYSAAGYGLGSALAVASGHSAWI 334
+D+G E+ S+ Y G+P ++ A +A A A GH+
Sbjct: 173 LDLGSKMAEISSSSSGL------PYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSH 226
Query: 335 SKP--PGVALP 343
P PG +P
Sbjct: 227 PSPGNPGYMIP 237
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 121 bits (304), Expect = 1e-27
Identities = 97/311 (31%), Positives = 136/311 (43%), Gaps = 57/311 (18%)
Query: 35 GGGGGSGLRASPGPGELGKVKKEQQDGEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRV 94
G G G+ +SP PG G+ADD W P
Sbjct: 23 GAGLELGIASSPTPGSTAST-----GGKADDPS-----------------WCKTP----- 55
Query: 95 NGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFI 154
H+KRPMNAFMVW+Q RRK+ +Q P +HNAE+SK LGK W+LL +SDK PFI
Sbjct: 56 ------SGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFI 109
Query: 155 EEAERLRMQHKKDHPDYKYQPRRR-----KNGKAAQGEAECPGGEAEQGGTAAIQAHYKS 209
EAERLR++H D+PDYKY+PR++ N ++ + PG + ++ G + H
Sbjct: 110 REAERLRLKHMADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGG 169
Query: 210 AHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGKP 269
G GS + G SG G + P K+ K G + G KP
Sbjct: 170 G-------GGGSSNAGGGGGGASG--GGANSKPAQKKS------CGSKVAGGAGGGVSKP 214
Query: 270 H---IDFGNVDIGEISHEVMSNMETFDVAELDQYLPPNGHPGHVSSYSAAGYGLGSALAV 326
H I G G+ + ++ + A LP H S Y A ++ +
Sbjct: 215 HAKLILAGGGGGGKAAAAAAASFAA-EQAGAAALLPLGAAADHHSLYKARTPSASASASS 273
Query: 327 ASGHSAWISKP 337
A+ SA ++ P
Sbjct: 274 AASASAALAAP 284
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 121 bits (303), Expect = 2e-27
Identities = 70/154 (45%), Positives = 90/154 (58%), Gaps = 13/154 (8%)
Query: 104 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQ 163
++RPMNAFMVWA+ R++LA Q P LHNA LSK LGK W+ LN ++KRPF+EEAERLR+Q
Sbjct: 85 IRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQ 144
Query: 164 HKKDHPDYKYQPRRRKNGKAA---QGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEG 220
H +DHP+YKY+PRR+K + A + PG Q A SA P G
Sbjct: 145 HLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPPLG 204
Query: 221 SPMSDGNPEHPSGQSHGPPTPPTTPKTELQSGKA 254
+ DG G PTP +P L+ G+A
Sbjct: 205 AEF-DG---------LGLPTPERSPLDGLEPGEA 228
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 120 bits (302), Expect = 2e-27
Identities = 87/278 (31%), Positives = 130/278 (46%), Gaps = 32/278 (11%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G + VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL +++KRPFI+
Sbjct: 131 GGGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFID 190
Query: 156 EAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHR 215
EA+RLR H K++PDYKY+PRR+ + + P G G AA A +A
Sbjct: 191 EAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASS 250
Query: 216 HPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGN 275
G G + H +G ++G + Q G A P SM P
Sbjct: 251 PVGVGQRLD--TYTHVNGWANG-----AYSLVQEQLGYAQPP----SMSSPPPP------ 293
Query: 276 VDIGEISHEVMSNMETFDVAELDQYLP--PNGHPGHV----SSYSAAGYGLGSALAVASG 329
+ M +D+A L QY P P G ++ ++ +A+GYG + A A+
Sbjct: 294 --------PALPPMHRYDMAGL-QYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAA 344
Query: 330 HSAWISKPPGVALPTVSPPGVDAKAQVKTETAGPQGPP 367
+A+ +P A + + + P PP
Sbjct: 345 AAAYGQQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPP 382
>gi|4759162 SRY-box 14 [Homo sapiens]
Length = 240
Score = 120 bits (300), Expect = 3e-27
Identities = 50/81 (61%), Positives = 68/81 (83%)
Query: 98 SKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEA 157
SK H+KRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRP+I+EA
Sbjct: 2 SKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEA 61
Query: 158 ERLRMQHKKDHPDYKYQPRRR 178
+RLR QH K+HPDYKY+PRR+
Sbjct: 62 KRLRAQHMKEHPDYKYRPRRK 82
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 119 bits (299), Expect = 4e-27
Identities = 105/322 (32%), Positives = 143/322 (44%), Gaps = 41/322 (12%)
Query: 89 PMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNES 148
P R G S+ ++RPMNAFMVWA+ R++LA Q P LHNAELSK LGK W+ L S
Sbjct: 30 PAVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLS 89
Query: 149 DKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYK 208
KRP+++EAERLR+QH +D+P+YKY+PRR+K K C + G + + +
Sbjct: 90 QKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRL-----CK--RVDPGFLLSSLSRDQ 142
Query: 209 SAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGK 268
+A + R GS + G E S P T L S + G GG
Sbjct: 143 NALPEKR---SGSRGALGEKEDRGEYS---------PGTALPSLRGCYHEGPAGGGGGGT 190
Query: 269 PHIDFGNVDIGEISHEVMSNMETFDVAELDQYL------PPNGHPGHVSSYSAAGYGLGS 322
P +VD M DV E +Q +GHP + G+
Sbjct: 191 P----SSVDTYPYGLPTPPEMSPLDVLEPEQTFFSSPCQEEHGHPRRIP--HLPGHPYSP 244
Query: 323 ALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTETAGPQGPPHYTDQPSTSQIAYTS 382
A + H S P G +L PGV + V P P +Y+ P+T +++
Sbjct: 245 EYAPSPLH---CSHPLG-SLALGQSPGVSMMSPV---PGCPPSPAYYS--PATYHPLHSN 295
Query: 383 LSLPHYGSAFPSISRPQFDYSD 404
L H G P P FD D
Sbjct: 296 LQ-AHLGQLSPPPEHPGFDALD 316
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 116 bits (291), Expect = 4e-26
Identities = 52/90 (57%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 104 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQ 163
VKRPMNAFMVW+ A RR++A Q P +HN+E+SK LG W+LL+E +KRPF+EEA+RLR +
Sbjct: 49 VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
Query: 164 HKKDHPDYKYQPRRRKNGKAAQGEAECPGG 193
H +D+PDYKY+PRR+ A G + C G
Sbjct: 109 HLRDYPDYKYRPRRKAKSSGA-GPSRCGQG 137
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 115 bits (288), Expect = 8e-26
Identities = 52/99 (52%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 103 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
H+KRPMNAFMVW++ RRK+ +Q P +HNAE+SK LGK W++L +S+K PFI EAERLR+
Sbjct: 48 HIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRL 107
Query: 163 QHKKDHPDYKYQPRR--RKNGKAAQGEAECPGGEAEQGG 199
+H D+PDYKY+PR+ + + A ++ P A GG
Sbjct: 108 KHMADYPDYKYRPRKKPKMDPSAKPSASQSPEKSAAGGG 146
>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
sapiens]
Length = 377
Score = 100 bits (248), Expect = 4e-21
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G ++PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ + +K+P+ E
Sbjct: 162 GRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYE 221
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL QH + +PDYKY+PR ++
Sbjct: 222 EQARLSKQHLEKYPDYKYKPRPKR 245
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 100 bits (248), Expect = 4e-21
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G ++PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ + +K+P+ E
Sbjct: 535 GRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYE 594
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL QH + +PDYKY+PR ++
Sbjct: 595 EQARLSKQHLEKYPDYKYKPRPKR 618
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 100 bits (248), Expect = 4e-21
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G ++PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ + +K+P+ E
Sbjct: 548 GRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYE 607
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL QH + +PDYKY+PR ++
Sbjct: 608 EQARLSKQHLEKYPDYKYKPRPKR 631
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 97.4 bits (241), Expect = 2e-20
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G + S+PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ ++ +K+P+ E
Sbjct: 626 GRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYE 685
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL H + +P+YKY+PR ++
Sbjct: 686 EQARLSKIHLEKYPNYKYKPRPKR 709
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 97.4 bits (241), Expect = 2e-20
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G + S+PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ ++ +K+P+ E
Sbjct: 586 GRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYE 645
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL H + +P+YKY+PR ++
Sbjct: 646 EQARLSKIHLEKYPNYKYKPRPKR 669
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 97.4 bits (241), Expect = 2e-20
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G + S+PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ ++ +K+P+ E
Sbjct: 589 GRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYE 648
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL H + +P+YKY+PR ++
Sbjct: 649 EQARLSKIHLEKYPNYKYKPRPKR 672
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 97.4 bits (241), Expect = 2e-20
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 96 GASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIE 155
G + S+PH+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ ++ +K+P+ E
Sbjct: 593 GRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYE 652
Query: 156 EAERLRMQHKKDHPDYKYQPRRRK 179
E RL H + +P+YKY+PR ++
Sbjct: 653 EQARLSKIHLEKYPNYKYKPRPKR 676
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 97.4 bits (241), Expect = 2e-20
Identities = 39/82 (47%), Positives = 58/82 (70%)
Query: 98 SKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEA 157
S++ H+KRPMNAFMVWA+ RRK+ +P +HN+ +SK LG W+ + +K+P+ EE
Sbjct: 418 SRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQ 477
Query: 158 ERLRMQHKKDHPDYKYQPRRRK 179
RL QH + +PDYKY+PR ++
Sbjct: 478 ARLSRQHLEKYPDYKYKPRPKR 499
>gi|4507225 sex determining region Y [Homo sapiens]
Length = 204
Score = 94.7 bits (234), Expect = 2e-19
Identities = 39/84 (46%), Positives = 62/84 (73%)
Query: 95 NGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFI 154
N + VKRPMNAF+VW++ RRK+A + P + N+E+SK LG W++L E++K PF
Sbjct: 51 NSKGNVQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFF 110
Query: 155 EEAERLRMQHKKDHPDYKYQPRRR 178
+EA++L+ H++ +P+YKY+PRR+
Sbjct: 111 QEAQKLQAMHREKYPNYKYRPRRK 134
>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
sapiens]
Length = 501
Score = 82.4 bits (202), Expect = 8e-16
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 103 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
HVKRPMNAFMVWA+ R LA P +NAE+S LG W L+E K+P+ +EA++++
Sbjct: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
Query: 163 QHKKDHPDYKYQPRRRK 179
+H+++ P + YQPR K
Sbjct: 396 KHREEFPGWVYQPRPGK 412
>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
sapiens]
Length = 753
Score = 82.4 bits (202), Expect = 8e-16
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 103 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
HVKRPMNAFMVWA+ R LA P +NAE+S LG W L+E K+P+ +EA++++
Sbjct: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
Query: 163 QHKKDHPDYKYQPRRRK 179
+H+++ P + YQPR K
Sbjct: 396 KHREEFPGWVYQPRPGK 412
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 67.0 bits (162), Expect = 3e-11
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 14 PVGSEEPRCLSPGSAPSLGP-DGGGGGSGLRASPGPGELGKVKKEQQDGEADDDKFPVCI 72
P G+ P PG LG + G G G G+ + + + DD F +
Sbjct: 97 PPGATCPESPGPGPPHPLGVVESGKGPPPTTEEEASGPPGEPRLDSETESDHDDAFLSIM 156
Query: 73 REAVSQVL---SGYDWTLVPMPVRVNGAS---------KSKPHVKRPMNAFMVWAQAARR 120
+ L +L +P + +S + K H++RPMNAFM++++ R
Sbjct: 157 SPEIQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRA 216
Query: 121 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKY--QPRRR 178
+ ++P+ N +SK LG+ W L +K+ + + A +++ H K HPD+K+ + R++
Sbjct: 217 LVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKK 276
Query: 179 KNGKAAQGEAECPGGEAE-------QGGTAA 202
+ +A GG E + GTAA
Sbjct: 277 SSSEAKPTSLGLAGGHKETRERSMSETGTAA 307
Score = 29.6 bits (65), Expect = 6.1
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 180 NGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDG-NPEHPSGQSHGP 238
N E+ E GGT + R PG P S G P HP G
Sbjct: 69 NQSKEPAESAAVAHERPPGGTGSADPE--------RPPGATCPESPGPGPPHPLGVVESG 120
Query: 239 PTPPTTPKTELQSGKADPKRDGRS 262
PP T + E +P+ D +
Sbjct: 121 KGPPPTTEEEASGPPGEPRLDSET 144
Score = 29.3 bits (64), Expect = 8.0
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 341 ALPTVSPPGVDA---------KAQVKTETAGPQGPPHYTDQPSTSQIAYTSLSLPHYGSA 391
A PT PPG +A A T P G P T S S A + LP +
Sbjct: 1522 ATPTEQPPGAEAPLPVPPPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPPPPES 1581
Query: 392 FPSISRPQFDYSDHQPSGPYYGHSGQASG 420
P +P ++ + QPS P G S A+G
Sbjct: 1582 GP--GQPGWEGAP-QPSPPPPGPSTAATG 1607
>gi|13786123 HMG-box transcription factor TCF-3 [Homo sapiens]
Length = 588
Score = 65.5 bits (158), Expect = 1e-10
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 88 VPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNE 147
V PV V + KPHVK+P+NAFM++ + R K+ + +A +++ LG+ W L+
Sbjct: 330 VKSPVTVKKEEEKKPHVKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRKWHNLSR 389
Query: 148 SDKRPFIEEAERLRMQHKKDHP------DYKYQPRRRKNGKAAQGEAECPGGEAEQGGTA 201
++ + E A + R H + +P +Y + +R++ + +Q +++ EAE G A
Sbjct: 390 EEQAKYYELARKERQLHSQLYPTWSARDNYGKKKKRKREKQLSQTQSQQQVQEAE-GALA 448
Query: 202 AIQAHYKSAHLDHRHPGEGSPMSDG----NPEHPSGQSHGPPTPPTTPKTELQSGKADPK 257
+ +L P + S G +P PS P P T + Q K
Sbjct: 449 SKSKKPCVQYLPPEKPCDSPASSHGSMLDSPATPSAALASPAAPAATHSEQAQPLSLTTK 508
Query: 258 RDGRS 262
+ R+
Sbjct: 509 PETRA 513
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 58.5 bits (140), Expect = 1e-08
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 19/199 (9%)
Query: 60 DGEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVN-GASKSKPHVKRPMNAFMVWAQAA 118
+G++D D+ R+ + + D PV V G + P KRPM+A+M+W A+
Sbjct: 507 EGDSDRDEKK---RKQLKKAKMAKDRKSRKKPVEVKKGKDPNAP--KRPMSAYMLWLNAS 561
Query: 119 RRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDY------- 171
R K+ +P + +LSK G++W+ +++ K + +AE R ++K +Y
Sbjct: 562 REKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGES 621
Query: 172 --KYQPRRRKNGKAAQGEAECPG-GEAEQGGTAAIQAHYKSAHL---DHRHPGEGSPMSD 225
+ + +++K K + P G + + + + +KS D GE
Sbjct: 622 SKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKK 681
Query: 226 GNPEHPSGQSHGPPTPPTT 244
S + TPP++
Sbjct: 682 RRRSEDSEEEELASTPPSS 700
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 96 GASKSKPHV-KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFI 154
G K P+ KRP + F ++ R K+ P + +++K LG++W LN+S+K+P+I
Sbjct: 84 GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYI 143
Query: 155 EEAERLRMQHKKDHPDYK 172
+A +L+ +++KD DYK
Sbjct: 144 TKAAKLKEKYEKDVADYK 161
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 105 KRPMNAFMVWAQAARRKLADQYPHL--HNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
K M+A+ + Q R + + P + + AE SK + W+ ++ +K F E A+ ++
Sbjct: 10 KGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV 69
Query: 163 QHKKDHPDY 171
++ ++ DY
Sbjct: 70 RYDREMKDY 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,951,736
Number of Sequences: 37866
Number of extensions: 1491547
Number of successful extensions: 9910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 8579
Number of HSP's gapped (non-prelim): 1780
length of query: 466
length of database: 18,247,518
effective HSP length: 106
effective length of query: 360
effective length of database: 14,233,722
effective search space: 5124139920
effective search space used: 5124139920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.