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Search of human proteins with 56550059
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b
[Homo sapiens]
(572 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b ... 1172 0.0
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ... 1111 0.0
gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo ... 185 9e-47
gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo ... 183 3e-46
gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo ... 179 5e-45
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 42 0.002
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 42 0.002
gi|236459851 ubinuclein 2 [Homo sapiens] 41 0.003
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 40 0.004
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 40 0.004
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 40 0.004
gi|18201913 forkhead box N1 [Homo sapiens] 40 0.004
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 40 0.004
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 40 0.004
gi|217416388 neuralized homolog 1B [Homo sapiens] 40 0.006
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 40 0.008
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 39 0.010
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 39 0.013
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 39 0.013
gi|151301154 mucin 6, gastric [Homo sapiens] 39 0.017
gi|26667219 eyes absent 1 isoform c [Homo sapiens] 38 0.022
gi|19924103 synapsin II isoform IIa [Homo sapiens] 38 0.022
gi|56605981 tripartite motif-containing 72 [Homo sapiens] 38 0.022
gi|30520320 ring finger protein 166 [Homo sapiens] 38 0.022
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 38 0.029
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 38 0.029
gi|237649113 Rho-related BTB domain containing 2 isoform 3 [Homo... 38 0.029
gi|237649111 Rho-related BTB domain containing 2 isoform 2 [Homo... 38 0.029
gi|237649109 Rho-related BTB domain containing 2 isoform 1 [Homo... 38 0.029
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 38 0.029
>gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b
[Homo sapiens]
Length = 572
Score = 1172 bits (3032), Expect = 0.0
Identities = 572/572 (100%), Positives = 572/572 (100%)
Query: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
Sbjct: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
Query: 61 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL 120
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
Sbjct: 61 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL 120
Query: 121 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 180
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
Sbjct: 121 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 180
Query: 181 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL 240
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
Sbjct: 181 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL 240
Query: 241 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP 300
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
Sbjct: 241 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP 300
Query: 301 PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD 360
PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD
Sbjct: 301 PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD 360
Query: 361 WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL 420
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL
Sbjct: 361 WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL 420
Query: 421 SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHR 480
SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHR
Sbjct: 421 SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHR 480
Query: 481 AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAG 540
AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAG
Sbjct: 481 AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAG 540
Query: 541 EEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA 572
EEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA
Sbjct: 541 EEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA 572
>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
[Homo sapiens]
Length = 639
Score = 1111 bits (2874), Expect = 0.0
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
Sbjct: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
Query: 61 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL 120
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
Sbjct: 61 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL 120
Query: 121 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 180
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
Sbjct: 121 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 180
Query: 181 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL 240
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
Sbjct: 181 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL 240
Query: 241 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP 300
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
Sbjct: 241 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP 300
Query: 301 PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD 360
PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD
Sbjct: 301 PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD 360
Query: 361 WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL 420
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL
Sbjct: 361 WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL 420
Query: 421 SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHR 480
SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHR
Sbjct: 421 SVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHR 480
Query: 481 AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAG 540
AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAG
Sbjct: 481 AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAG 540
>gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 185 bits (470), Expect = 9e-47
Identities = 125/266 (46%), Positives = 141/266 (53%), Gaps = 59/266 (22%)
Query: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
Query: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
SN D PSPP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 156 -------TTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
Query: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
Query: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
Query: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
+ST VLP R PQFQQH VY SF F
Sbjct: 287 HSTPPVLPPRPPQFQQHLTVYESFFF 312
Score = 100 bits (249), Expect = 4e-21
Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 11/107 (10%)
Query: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
WH+I T+E LCP RKP PE +VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 3 WHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
Query: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 59 ------CLSLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSST 99
>gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 183 bits (465), Expect = 3e-46
Identities = 124/266 (46%), Positives = 141/266 (53%), Gaps = 59/266 (22%)
Query: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
Query: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
SN D PSPP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 156 -------TTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
Query: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
Query: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
Query: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
+ST VLP R P+FQQH VY SF F
Sbjct: 287 HSTPPVLPLRPPRFQQHLTVYESFFF 312
Score = 103 bits (257), Expect = 4e-22
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 11/107 (10%)
Query: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
WH+I T+E LCP RKP PE P+VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 3 WHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
Query: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 59 ------CLSLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSST 99
>gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 179 bits (455), Expect = 5e-45
Identities = 123/266 (46%), Positives = 139/266 (52%), Gaps = 59/266 (22%)
Query: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
Query: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
SN D PSP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 156 -------TTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
Query: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
Query: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
Query: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
+ST VLP R P FQQH VY SF F
Sbjct: 287 HSTPPVLPLRPPXFQQHLTVYESFFF 312
Score = 104 bits (259), Expect = 2e-22
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 11/107 (10%)
Query: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
WH+I T+E LCP RKP PE P+VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 3 WHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
Query: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 59 ------CLSLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSST 99
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 42.0 bits (97), Expect = 0.002
Identities = 48/180 (26%), Positives = 68/180 (37%), Gaps = 42/180 (23%)
Query: 292 SNSDTPSP--------PPGLSKSNPVIP-----ISSSNHSARSPFEGAVTESQSLFSDNF 338
S PSP P G S + P IP IS+ AR+ ESQS S+
Sbjct: 1125 SGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETS 1184
Query: 339 RHPNPIPSGLPP---FP-------------------------SSPQTSSDWPTAPEPQSL 370
+ +P L P FP S PQ + + P P P+S
Sbjct: 1185 KGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSR 1244
Query: 371 FTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQDQPSLSP 430
+S ++P +S+ Q S + E L DPF+ L + + +LSVQ P +P
Sbjct: 1245 -SSHSLPSEASSQPQVKTNGISDGKRESPLKIDPFEDLSFNLLAVSKAQLSVQTSPVPTP 1303
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 41.6 bits (96), Expect = 0.002
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 300 PPGLSKSNPVIP-----ISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPP---F 351
P G S + P IP IS+ AR+ ESQS S+ + +P L P F
Sbjct: 1227 PAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAF 1286
Query: 352 P-------------------------SSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQA 386
P S PQ + + P P P+S +S ++P +S+ Q
Sbjct: 1287 PPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSR-SSHSLPSEASSQPQV 1345
Query: 387 AFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQDQPSLSP 430
S + E L DPF+ L + + +LSVQ P +P
Sbjct: 1346 KTNGISDGKRESPLKIDPFEDLSFNLLAVSKAQLSVQTSPVPTP 1389
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 40.8 bits (94), Expect = 0.003
Identities = 64/247 (25%), Positives = 97/247 (39%), Gaps = 46/247 (18%)
Query: 263 KNKVTPLQSPIDKPSDSLSIGNGDNSQQ------ISNSD----------TPSPPPGLSKS 306
+N V+PLQ+ I K + + +N Q I SD TPSP G S
Sbjct: 937 QNYVSPLQATISKSQTNPVVKLSNNPQLSCSSSLIKTSDKPLMYRLPLSTPSPGNGSQGS 996
Query: 307 NPVIP------ISSSNHSAR------------SPFEGAVTESQSLFSDNFRHPNPIPSGL 348
+P++ +SSN+ A+ SPF A + + P P+PS
Sbjct: 997 HPLVSRTVPSTTTSSNYLAKAMVSQISTQGFKSPFSMAASPKLAASPKPATSPKPLPSPK 1056
Query: 349 P---PFPS---SPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
P P PS P S+ + P T P SSS + A G SS
Sbjct: 1057 PSASPKPSLSAKPSVSTKLISKSNPTPKPTVS--PSSSSPNALVAQGSHSSTNSPVHKQP 1114
Query: 403 DPFDVTRKA-LADLIEKELSVQDQPSLS---PTSLQNSSSHTTTAKGPGSGFLHPAAATN 458
+++R++ +L+ + P+ + P+ L NSSS T K SG A+
Sbjct: 1115 SGMNISRQSPTLNLLPSSRTSGLPPTKNLQAPSKLTNSSSTGTVGKNSLSGIAMNVPASR 1174
Query: 459 ANSLNST 465
++LNS+
Sbjct: 1175 GSNLNSS 1181
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 40.4 bits (93), Expect = 0.004
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-NGL-CPACRK 58
DA + +ECP+CME + + CG+ ICR C ++ NG+ CP C K
Sbjct: 12 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 66
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 40.4 bits (93), Expect = 0.004
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-NGL-CPACRK 58
DA + +ECP+CME + + CG+ ICR C ++ NG+ CP C K
Sbjct: 12 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 66
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 40.4 bits (93), Expect = 0.004
Identities = 58/272 (21%), Positives = 102/272 (37%), Gaps = 22/272 (8%)
Query: 288 SQQISNSDTPSPPP-----GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
+Q + P P P G + P + S+H P A T++
Sbjct: 1159 NQLMMTGPKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSR---------P 1209
Query: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTS-ETIPVSSSTDWQAAFGFGSSKQPEDDLG 401
P+ P P PQT ++ P + EP + S E + S + + +P + G
Sbjct: 1210 KTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNRG 1269
Query: 402 FDPFDVTRKALADLIEKELSVQDQPS--LSPTSLQNSSSHTTTAKGPGSGFLHPAAATNA 459
FD + L + + ++ PS +P + + S + K SG A+ +N+
Sbjct: 1270 FDQQGLNPTTLKAIGQAPSNLTMNPSNFATPQTHKLDSVVVNSGKQSNSGATKRASPSNS 1329
Query: 460 NSLNSTFSVLPQRFPQFQQHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSN 519
+ S P Q +A + + AA + PRN ++ ANP +
Sbjct: 1330 RRSSPGSSRKTTPSPGRQNSKAPKLTLASQTNAALLQNVELPRNVLVSPTPLANPPVPGS 1389
Query: 520 F-LDLNLPPQHNT----GLGGIPVAGEEEVKV 546
F + L PQ++T +GG+ +E + V
Sbjct: 1390 FPNNSGLNPQNSTVSVAAVGGVVEDNKESLNV 1421
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 40.4 bits (93), Expect = 0.004
Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 244 LYKLNPNFLQLSTGSVDKNKNK-VTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPG 302
L+ LNP + + K K K ++ + KP + S+ GD +++ + PPPG
Sbjct: 345 LWALNPAKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSL-IGDKREKLGSPLLGCPPPG 403
Query: 303 LSKSNPVIPIS---------SSNHSARSPFEG-------AVTESQSLFSDNFRHPNP--I 344
LS S P+ P++ S H A P G + + S + + H +P
Sbjct: 404 LSGSGPIRPLAPPAGLSPPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLA 463
Query: 345 PSGLPPFPSSPQTSSDWPTAPEP----QSLFTSETIPVSSS---TDWQAAFGFGSSKQPE 397
P G PP P PQ +P S + T P S+ + A + P+
Sbjct: 464 PPG-PPQPLFPQPDGHLELRAQPGTPQDSPLPAHTPPSHSAKLLAEPSPARTMHDTLLPD 522
Query: 398 DDLGFDPFDVTRKALADLIEK----ELSVQDQPSLSPTSLQNSSSHTTTAKGP 446
DLG D D +L D + E D +L P L SS +++ P
Sbjct: 523 GDLGTD-LDAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSPTSSSMPPP 574
>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 40.4 bits (93), Expect = 0.004
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 234 QEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISN 293
Q+ EQ L ++ + P L S SVD+ K K L S +++P+ S+ G + ++
Sbjct: 286 QKIEQVLKEQPGRGLPQ-LPSSCYSVDRGKRKTGTLGS-LEEPAGGASVSAGSRAVGVAG 343
Query: 294 --SDTPSPP------------PGLSKSNPVIPISSSNHSARSP-------FEGAVTESQS 332
+ PP PG S S+ +P SS A +P FE ++
Sbjct: 344 VAGEAGPPPEREGSGSTKPGTPGNSPSSQRLPSKSSLDPAVNPVPKPKRTFEYEADKNPK 403
Query: 333 LFSDNFRHPNPIPSGLPPFPSSP--------------------QTSSDWPTAPEPQSLFT 372
N P+P P+ PP PS+P + S ++ A QSL+
Sbjct: 404 SKPSNGLPPSPTPAAPPPLPSTPAPPVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYP 463
Query: 373 SETIPVSSSTDWQAAFGFGSS 393
S P + T+ Q FG S+
Sbjct: 464 SS--PTENGTENQPKFGSKST 482
>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 40.4 bits (93), Expect = 0.004
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 234 QEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISN 293
Q+ EQ L ++ + P L S SVD+ K K L S +++P+ S+ G + ++
Sbjct: 286 QKIEQVLKEQPGRGLPQ-LPSSCYSVDRGKRKTGTLGS-LEEPAGGASVSAGSRAVGVAG 343
Query: 294 --SDTPSPP------------PGLSKSNPVIPISSSNHSARSP-------FEGAVTESQS 332
+ PP PG S S+ +P SS A +P FE ++
Sbjct: 344 VAGEAGPPPEREGSGSTKPGTPGNSPSSQRLPSKSSLDPAVNPVPKPKRTFEYEADKNPK 403
Query: 333 LFSDNFRHPNPIPSGLPPFPSSP--------------------QTSSDWPTAPEPQSLFT 372
N P+P P+ PP PS+P + S ++ A QSL+
Sbjct: 404 SKPSNGLPPSPTPAAPPPLPSTPAPPVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYP 463
Query: 373 SETIPVSSSTDWQAAFGFGSS 393
S P + T+ Q FG S+
Sbjct: 464 SS--PTENGTENQPKFGSKST 482
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 13 ECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69
EC +C + E+D + + TCG+ +C C R++ CP CR+P + +Y+P
Sbjct: 502 ECTVCFDG-EVDTVIY---TCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYRP 555
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 39.7 bits (91), Expect = 0.008
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 9 EDPVECPLCME----PLEIDDINFFPCTCGYQICRFCWHRIR--TDENGLCPACRKPYPE 62
E+ V C +C++ P+ ID CG+ CR C +R + +CP C+KP+ +
Sbjct: 11 EEEVTCSICLDYLRDPVTID--------CGHVFCRSCTTDVRPISGSRPVCPLCKKPFKK 62
Query: 63 D---PAVYKPLSQEELQRIKNEKKQKQNE 88
+ P E ++R+K +K ++ E
Sbjct: 63 ENIRPVWQLASLVENIERLKVDKGRQPGE 91
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 39.3 bits (90), Expect = 0.010
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 60 YPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLAS-VRVVQKNLVFVVGLSQ 118
+PE P S+ Q I + Q + + H + Q + V +
Sbjct: 54 HPEQPG-----SEASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPF 108
Query: 119 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 178
R DP++ + FG+FGKI V I +G +VT+ S DA RA + +N
Sbjct: 109 RFRDPDLR---QMFGQFGKILDVEI-----IFNERGSKGFGFVTFETSSDADRAREKLNG 160
Query: 179 VVVDGRTLKASLGTTK 194
+V+GR ++ + T +
Sbjct: 161 TIVEGRKIEVNNATAR 176
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 38.9 bits (89), Expect = 0.013
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 294 SDTPSPPPGLSKSNPVIPI--SSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPF 351
+ TP P LS SN + P+ +S S R+P A SQ + + IP LP
Sbjct: 318 AQTPLLPAKLSASNALDPMLPASVGGSTRTPRPAAAQPSQKITATK------IPKSLPTK 371
Query: 352 PSSPQTS-----SDWPTAPEPQSLFTSETIP 377
PS+P TS S PT S FT +P
Sbjct: 372 PSAPSTSIVPIKSPHPTQKTAPSSFTKSALP 402
Score = 33.1 bits (74), Expect = 0.71
Identities = 41/175 (23%), Positives = 57/175 (32%), Gaps = 39/175 (22%)
Query: 292 SNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPF 351
+ + T PPP + S+ P S S R P+ + P
Sbjct: 474 ARTSTHKPPPFTALSSSPAPTPGSTRSTRP-----------------------PATMVPP 510
Query: 352 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKA 411
S T P P P S T P+ S +A G P + P R
Sbjct: 511 TSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKA----GPKSSPRKPVPLRPGKAARDV 566
Query: 412 -LADLIEKELSVQDQPS--------LSPTSLQNSSSHTTTAKGPGSGFLHPAAAT 457
L+DL + Q QPS L+P +SS T++ G H A +T
Sbjct: 567 PLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSS---GYSIFHLAGST 618
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 38.9 bits (89), Expect = 0.013
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 18/81 (22%)
Query: 11 PVECPLCMEPLEIDDINFFPCT--CGYQICRFC----W-HRIRTDENG-----LCPACRK 58
P CP+C+EPL P T CG+ C C W HR + G CP C++
Sbjct: 6 PFSCPICLEPLR------EPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQE 59
Query: 59 PYPEDPAVYKPLSQEELQRIK 79
P+P+ + K + EL +++
Sbjct: 60 PFPDGLQLRKNHTLSELLQLR 80
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 38.5 bits (88), Expect = 0.017
Identities = 67/281 (23%), Positives = 96/281 (34%), Gaps = 61/281 (21%)
Query: 266 VTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEG 325
+TP S + S S S S T P + + + P +S R+P
Sbjct: 1895 MTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITPKHTST-GTRTPVAH 1953
Query: 326 AVTESQSLFSDNFRHPNPIPSGLPPFPS-------SPQTSSDWPTAPEPQ---------- 368
+ S S F +P P+G PF S S QT++ +PT PQ
Sbjct: 1954 TTSASSSRLPTPFTTHSP-PTGSSPFSSTGPMTATSFQTTTTYPTPSHPQTTLPTHVPPF 2012
Query: 369 --SLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQDQP 426
SL T T V +T Q A P G P T KA S P
Sbjct: 2013 STSLVTPSTHTVIITTHTQMATSASIHSTP---TGTVPPPTTLKATG-------STHTAP 2062
Query: 427 SLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQQHRAVYNSF 486
++ T+ S +H++ + AT ++S S+ S LPQ NS
Sbjct: 2063 PMTVTTSGTSQTHSSF-----------STATASSSFISSSSWLPQ------------NSS 2099
Query: 487 SFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPP 527
S P + + HL+ P S +N L + P
Sbjct: 2100 SRPPSSP-------ITTQLPHLSSATTPVSTTNQLSSSFSP 2133
Score = 37.7 bits (86), Expect = 0.029
Identities = 75/328 (22%), Positives = 115/328 (35%), Gaps = 46/328 (14%)
Query: 266 VTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEG 325
+TP S + S S S S T P + + + P +S + R+P
Sbjct: 1502 ITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVTPTSTTTITPNPTSTRT-RTP--- 1557
Query: 326 AVTESQSLFSDNFRHPNPIPSGLPPFPSSP------------QTSSDWPTAPEPQ----- 368
V + S S R P P + PP SSP +T++ +PT PQ
Sbjct: 1558 -VAHTNSATSS--RPPPPFTTHSPPTGSSPFSSTGPMTATSFKTTTTYPTPSHPQTTLPT 1614
Query: 369 -------SLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELS 421
SL T T V + T Q A P G P T KA S
Sbjct: 1615 HVPPFSTSLVTPSTHTVITPTHAQMATSASIHSMP---TGTIPPPTTLKATG-------S 1664
Query: 422 VQDQPSLSPTSLQNSS--SHTTTAKGPGSGFLHPAAATNANSLN-STFSVLPQRFPQFQQ 478
P+++ T+ S S TAK S H ++ +A + + ST ++ P
Sbjct: 1665 THTAPTMTLTTSGTSQALSSLNTAKTSTSLHSHTSSTHHAEATSTSTTNITPNPTSTGTP 1724
Query: 479 HRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPV 538
V S + +++ + + H + T +P S ++ P H + PV
Sbjct: 1725 PMTVTTSGTSQSRSS-FSTAKTSTSLHSHTSSTHHPEVTST-STTSITPNHTSTGTRTPV 1782
Query: 539 AGEEEVKVSTMPLSTSSHSLQQGQQPTS 566
A S +P ++HS G P S
Sbjct: 1783 AHTTSATSSRLPTPFTTHSPPTGTTPIS 1810
Score = 33.5 bits (75), Expect = 0.54
Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 29/218 (13%)
Query: 268 PLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAV 327
P + + P + + G S + +P PG P P ++ R+ E
Sbjct: 1344 PKSTNQELPGTTATQTTGPRPTPASTTGPTTPQPG----QPTRPTATETTQTRTTTEYTT 1399
Query: 328 TESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSDWPTAPEPQ------------SLFTSET 375
++ +P+PS P +S ++ +PT P+ SL T T
Sbjct: 1400 PQTPHTTHSPPTAGSPVPSTGPVTATSFHATTTYPTPSHPETTLPTHVPPFSTSLVTPST 1459
Query: 376 IPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQN 435
V + T Q A + P G P T KA S P ++PT+
Sbjct: 1460 HTVITPTHAQMATSASNHSAP---TGTIPPPTTLKATG-------STHTAPPITPTTSGT 1509
Query: 436 SSSHT--TTAKGPGSGFLHPAAATNAN-SLNSTFSVLP 470
S +H+ +T K P S H ++ + + ST ++ P
Sbjct: 1510 SQAHSSFSTNKTPTSLHSHTSSTHHPEVTPTSTTTITP 1547
Score = 30.0 bits (66), Expect = 6.0
Identities = 46/208 (22%), Positives = 76/208 (36%), Gaps = 27/208 (12%)
Query: 250 NFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDT---------PSPP 300
+++ S S + V S + P S ++ +G +S ++ T PS P
Sbjct: 2143 SYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTTLSSGSHSSLSTHPTTASVSASPLFPSSP 2202
Query: 301 PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD 360
+ +P H+ SPF + S + + + + S FPS+P+T++
Sbjct: 2203 AASTTIRATLP-----HTISSPFTLSALLPISTVTVSPTPSSHLASSTIAFPSTPRTTAS 2257
Query: 361 WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL 420
TAP S S T +S T GF S + P +
Sbjct: 2258 THTAPAFSS--QSTTSRSTSLTTRVPTSGFVSLTSGVTGIPTSP-----------VTNLT 2304
Query: 421 SVQDQPSLSPTSLQNSSSHTTTAKGPGS 448
+ P+LSPT+ +SS T P S
Sbjct: 2305 TRHPGPTLSPTTRFLTSSLTAHGSTPAS 2332
Score = 29.6 bits (65), Expect = 7.8
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 280 LSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFR 339
+++ SQ S+ T + S+ +P +SS+ SP + S +
Sbjct: 2064 MTVTTSGTSQTHSSFSTATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTP-VS 2122
Query: 340 HPNPIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSS 381
N + S P PS+P T S + + +S ++ SSS
Sbjct: 2123 TTNQLSSSFSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSS 2164
>gi|26667219 eyes absent 1 isoform c [Homo sapiens]
Length = 557
Score = 38.1 bits (87), Expect = 0.022
Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 35/241 (14%)
Query: 269 LQSPIDKPSDSLSIGNGD---NSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEG 325
L SP + S S +G NS SNS TP+ K+ P+ SS+ +A + +G
Sbjct: 6 LTSPHSRLSGSSESPSGPKLGNSHINSNSMTPNGTE--VKTEPM----SSSETASTTADG 59
Query: 326 AVTE-SQSLFSDNFRHPNPIPSGLPP--FPSSPQTSSDWPTAPEPQSLFTSETIPVSSST 382
++ S S + P P PP +PS+ PT P S + +T
Sbjct: 60 SLNNFSGSAIGSSSFSPRPTHQFSPPQIYPSNRPYPHILPT---PSSQTMAAYGQTQFTT 116
Query: 383 DWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQD------------QPSLSP 430
Q A + + QP G + + K L + + Q QP +P
Sbjct: 117 GMQQATAYATYPQPGQPYGISSYGI--KTEGGLSQSQSPGQTGFLSYGTSFSTPQPGQAP 174
Query: 431 TSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQF--QQHRAVYNSFSF 488
S Q S TT+ G +G + TN++ NS+ P +P F Q+ YNS +
Sbjct: 175 YSYQMQGSSFTTSSGIYTG---NNSLTNSSGFNSSQQDYPS-YPSFGQGQYAQYYNSSPY 230
Query: 489 P 489
P
Sbjct: 231 P 231
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 38.1 bits (87), Expect = 0.022
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 426 PSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVL------PQRFPQFQQH 479
PSL P+S +SSS ++ + PG H A ++++SL L PQ PQ +
Sbjct: 481 PSLPPSSSSSSSSSSSAPQRPGGPTTHGDAPSSSSSLAEAQPPLAAPPQKPQPHPQLNKS 540
Query: 480 RAVYNSFSF 488
+++ N+FSF
Sbjct: 541 QSLTNAFSF 549
>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
Length = 477
Score = 38.1 bits (87), Expect = 0.022
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI----RTDENGLCPAC 56
MS +P + CPLC++ + CG+ CR C R+ D LCP C
Sbjct: 1 MSAAPGLLHQELSCPLCLQLFDAP----VTAECGHSFCRACLGRVAGEPAADGTVLCPCC 56
Query: 57 RKP 59
+ P
Sbjct: 57 QAP 59
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 38.1 bits (87), Expect = 0.022
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 14 CPLCME----PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69
CP+C+E P+ I +CG+ C C + LCP CR P+ DP
Sbjct: 33 CPICLEVYHRPVAIG-------SCGHTFCGECLQPCLQVPSPLCPLCRLPF--DPKKVDK 83
Query: 70 LSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNL 110
+ E Q + + +K +++ R H++S VQ+ +
Sbjct: 84 ATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQM 124
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 37.7 bits (86), Expect = 0.029
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG--LCPACRKPYPEDPAV 66
++ + CP+C++ + D ++ CG+ CR C HR G CP CR +P PA
Sbjct: 7 QEELTCPICLDYFQ-DPVSI---ECGHNFCRGCLHRNWAPGGGPFPCPECR--HPSAPAA 60
Query: 67 YKP 69
+P
Sbjct: 61 LRP 63
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 37.7 bits (86), Expect = 0.029
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG--LCPACRKPYPEDPAV 66
++ + CP+C++ + D ++ CG+ CR C HR G CP CR +P PA
Sbjct: 7 QEELTCPICLDYFQ-DPVSI---ECGHNFCRGCLHRNWAPGGGPFPCPECR--HPSAPAA 60
Query: 67 YKP 69
+P
Sbjct: 61 LRP 63
>gi|237649113 Rho-related BTB domain containing 2 isoform 3 [Homo
sapiens]
Length = 727
Score = 37.7 bits (86), Expect = 0.029
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 33 CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIK-------NEKKQK 85
C YQ+ +C H I T+ N +C + +P D P +QE ++ + E+
Sbjct: 623 CAYQLADWCLHHICTNYNNVC----RKFPRDMKAMSPENQEYFEKHRWPPVWYLKEEDHY 678
Query: 86 QNERKQKISENRKHL 100
Q RK++ E+ HL
Sbjct: 679 QRARKEREKEDYLHL 693
>gi|237649111 Rho-related BTB domain containing 2 isoform 2 [Homo
sapiens]
Length = 734
Score = 37.7 bits (86), Expect = 0.029
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 33 CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIK-------NEKKQK 85
C YQ+ +C H I T+ N +C + +P D P +QE ++ + E+
Sbjct: 630 CAYQLADWCLHHICTNYNNVC----RKFPRDMKAMSPENQEYFEKHRWPPVWYLKEEDHY 685
Query: 86 QNERKQKISENRKHL 100
Q RK++ E+ HL
Sbjct: 686 QRARKEREKEDYLHL 700
>gi|237649109 Rho-related BTB domain containing 2 isoform 1 [Homo
sapiens]
Length = 749
Score = 37.7 bits (86), Expect = 0.029
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 33 CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIK-------NEKKQK 85
C YQ+ +C H I T+ N +C + +P D P +QE ++ + E+
Sbjct: 645 CAYQLADWCLHHICTNYNNVC----RKFPRDMKAMSPENQEYFEKHRWPPVWYLKEEDHY 700
Query: 86 QNERKQKISENRKHL 100
Q RK++ E+ HL
Sbjct: 701 QRARKEREKEDYLHL 715
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 37.7 bits (86), Expect = 0.029
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 10 DPVECPLCM----EPLEIDDINFFPCTCGYQICRFCWHRI------RTDENGLCPACRKP 59
D V CP+C EP+ ID CG+ CR C R +E+ CP C++P
Sbjct: 12 DEVNCPICQGTLREPVTID--------CGHNFCRACLTRYCEIPGPDLEESPTCPLCKEP 63
Query: 60 YPEDPAVYKP 69
+ P ++P
Sbjct: 64 F--RPGSFRP 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,340,136
Number of Sequences: 37866
Number of extensions: 1320963
Number of successful extensions: 7381
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 6856
Number of HSP's gapped (non-prelim): 791
length of query: 572
length of database: 18,247,518
effective HSP length: 108
effective length of query: 464
effective length of database: 14,157,990
effective search space: 6569307360
effective search space used: 6569307360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.