Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRIM32 Sequence: fasta or formatted (653aa) NCBI GI: 153791514
Description:

tripartite motif-containing 32

Referenced in:

Planar Cell Polarity
Tripartite Motif Family

Other entries for this name:
alt mRNA [653aa] tripartite motif-containing 32
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         48           5
 C cysteine            4.3         28           1
 D aspartate           4.4         29           1
 E glutamate           7.7         50           3
 F phenylalanine       3.5         23           2
 G glycine             7.7         50           3
 H histidine           2.3         15           2
 I isoleucine          3.8         25           2
 K lysine              4.7         31           2
 L leucine            11.3         74           2
 M methionine          1.7         11           1
 N asparagine          2.5         16           1
 P proline             4.4         29           2
 Q glutamine           4.4         29           2
 R arginine            6.9         45           3
 S serine              7.7         50           2
 T threonine           5.1         33           1
 V valine              7.5         49           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 32 
TRIM32                1.000   tripartite motif-containing 32 
TRIM2                 0.071   tripartite motif-containing 2 isoform 2 
TRIM2                 0.071   tripartite motif-containing 2 isoform 1 
TRIM71                0.038   tripartite motif-containing 71 
TRIM3                 0.036   tripartite motif-containing 3 
TRIM3                 0.036   tripartite motif-containing 3 
FLJ36208              0.036   hypothetical protein LOC283948 
TRIM21                0.036   tripartite motif protein 21 
TRIM75                0.036   tripartite motif-containing 75 
SPRYD5                0.035   SPRY domain containing 5 
TRIM59                0.034   tripartite motif-containing 59 
TRIM6                 0.033   tripartite motif-containing 6 isoform 2 
TRIM6                 0.033   tripartite motif-containing 6 isoform 1 
TRIM6-TRIM34          0.033   tripartite motif-containing 6 and tripartite motif-c...
TRIM10                0.032   tripartite motif-containing 10 isoform 1 
TRIM10                0.032   tripartite motif-containing 10 isoform 2 
TRIM26                0.031   tripartite motif-containing 26 
TRIM68                0.031   ring finger protein 137 
MID2                  0.030   midline 2 isoform 2 
MID2                  0.030   midline 2 isoform 1 
TRIM13                0.030   ret finger protein 2 isoform 2 
TRIM13                0.030   ret finger protein 2 isoform 1 
TRIM13                0.030   ret finger protein 2 isoform 1 
TRIM13                0.030   ret finger protein 2 isoform 1 
TRIM27                0.029   ret finger protein 
TRIM31                0.029   tripartite motif protein 31 
LOC283116             0.028   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.028   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.028   PREDICTED: similar to ring finger protein 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press