Guide to the Human Genome
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Name: TRIM10 Sequence: fasta or formatted (481aa) NCBI GI: 157426898
Description:

tripartite motif-containing 10 isoform 1

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [395aa] tripartite motif-containing 10 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         28           3
 C cysteine            4.2         20           1
 D aspartate           4.4         21           2
 E glutamate          10.2         49           2
 F phenylalanine       4.8         23           2
 G glycine             5.2         25           2
 H histidine           2.5         12           1
 I isoleucine          4.4         21           1
 K lysine              3.7         18           1
 L leucine            10.4         50           3
 M methionine          1.2          6           1
 N asparagine          2.1         10           1
 P proline             5.2         25           1
 Q glutamine           6.0         29           2
 R arginine            8.5         41           1
 S serine              6.4         31           2
 T threonine           5.6         27           1
 V valine              6.4         31           2
 W tryptophan          1.5          7           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 10 isoform 1 
TRIM10                0.764   tripartite motif-containing 10 isoform 2 
TRIM15                0.377   tripartite motif protein 15 
TRIM39                0.302   tripartite motif-containing 39 isoform 2 
TRIM26                0.290   tripartite motif-containing 26 
TRIM39                0.287   tripartite motif-containing 39 isoform 1 
TRIM7                 0.266   tripartite motif-containing 7 isoform 1 
TRIM68                0.264   ring finger protein 137 
TRIM27                0.262   ret finger protein 
TRIM58                0.246   tripartite motif-containing 58 
TRIM75                0.226   tripartite motif-containing 75 
TRIM38                0.224   tripartite motif-containing 38 
TRIM21                0.212   tripartite motif protein 21 
TRIM11                0.209   tripartite motif-containing 11 
TRIM60                0.196   ring finger protein 129 
TRIM4                 0.194   tripartite motif protein TRIM4 isoform beta 
TRIM41                0.188   tripartite motif-containing 41 isoform 1 
TRIM4                 0.179   tripartite motif protein TRIM4 isoform alpha 
TRIM6                 0.176   tripartite motif-containing 6 isoform 2 
TRIM6                 0.176   tripartite motif-containing 6 isoform 1 
MEFV                  0.171   Mediterranean fever protein 
TRIM17                0.168   tripartite motif-containing 17 isoform 1 
TRIM17                0.168   tripartite motif-containing 17 isoform 1 
TRIM69                0.167   tripartite motif-containing 69 isoform a 
TRIM31                0.158   tripartite motif protein 31 
TRIM41                0.157   tripartite motif-containing 41 isoform 2 
TRIM34                0.154   tripartite motif protein 34 isoform 1 
TRIM34                0.154   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.154   tripartite motif-containing 6 and tripartite motif-c...
TRIM22                0.154   tripartite motif-containing 22 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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