Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ST5 Sequence: fasta or formatted (1137aa) NCBI GI: 47132532
Description:

suppression of tumorigenicity 5 isoform 1

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [717aa] suppression of tumorigenicity 5 isoform 2
alt mRNA [1137aa] suppression of tumorigenicity 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         66           2
 C cysteine            1.8         21           2
 D aspartate           4.1         47           2
 E glutamate           7.7         88           3
 F phenylalanine       4.1         47           2
 G glycine             6.0         68           2
 H histidine           1.5         17           1
 I isoleucine          2.4         27           1
 K lysine              6.2         71           3
 L leucine            10.1        115           3
 M methionine          1.9         22           1
 N asparagine          2.5         28           1
 P proline             9.0        102           3
 Q glutamine           3.6         41           2
 R arginine            8.5         97           3
 S serine             13.0        148           3
 T threonine           4.2         48           2
 V valine              4.7         54           3
 W tryptophan          0.6          7           1
 Y tyrosine            2.0         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppression of tumorigenicity 5 isoform 1 
ST5                   1.000   suppression of tumorigenicity 5 isoform 1 
ST5                   0.598   suppression of tumorigenicity 5 isoform 2 
DENND2A               0.374   DENN/MADD domain containing 2A 
DENND2C               0.292   DENN/MADD domain containing 2C 
DENND2D               0.179   DENN/MADD domain containing 2D 
DENND1A               0.056   DENN/MADD domain containing 1A isoform 2 
DENND1A               0.056   DENN/MADD domain containing 1A isoform 1 
DENND1B               0.052   DENN/MADD domain containing 1B isoform 1 
DENND1B               0.048   DENN/MADD domain containing 1B isoform 2 
DENND1C               0.045   DENN/MADD domain containing 1C 
DENND5A               0.026   RAB6 interacting protein 1 
DENND5B               0.024   DENN/MADD domain containing 5B 
DENND4A               0.024   DENN/MADD domain containing 4A isoform 1 
DENND4A               0.024   DENN/MADD domain containing 4A isoform 2 
DENND3                0.024   DENN/MADD domain containing 3 
DENND4C               0.022   DENN/MADD domain containing 4C 
DENND4B               0.021   DENN/MADD domain containing 4B 
SBF1                  0.020   SET binding factor 1 
SBF2                  0.019   SET binding factor 2 
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing protei...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
MADD                  0.016   MAP-kinase activating death domain-containing prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press