Guide to the Human Genome
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Name: HRNBP3 Sequence: fasta or formatted (312aa) NCBI GI: 128485756
Description:

hexaribonucleotide binding protein 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         37           6
 C cysteine            0.0          0           0
 D aspartate           3.8         12           1
 E glutamate           4.5         14           1
 F phenylalanine       3.8         12           1
 G glycine             9.3         29           2
 H histidine           2.6          8           2
 I isoleucine          3.8         12           2
 K lysine              2.9          9           2
 L leucine             2.6          8           1
 M methionine          1.6          5           1
 N asparagine          3.5         11           2
 P proline            12.8         40           5
 Q glutamine           5.8         18           2
 R arginine            5.1         16           1
 S serine              3.8         12           2
 T threonine           9.0         28           2
 V valine              5.4         17           2
 W tryptophan          0.3          1           1
 Y tyrosine            7.4         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hexaribonucleotide binding protein 3 
A2BP1                 0.736   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.712   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.712   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.684   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.684   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.628   ataxin 2-binding protein 1 isoform 3 
RBM9                  0.581   RNA binding motif protein 9 isoform 5 
RBM9                  0.578   RNA binding motif protein 9 isoform 3 
RBM9                  0.576   RNA binding motif protein 9 isoform 6 
RBM9                  0.576   RNA binding motif protein 9 isoform 1 
RBM9                  0.451   RNA binding motif protein 9 isoform 2 
RBM9                  0.445   RNA binding motif protein 9 isoform 4 
BOLL                  0.082   boule isoform 1 
BOLL                  0.071   boule isoform 2 
DAZAP1                0.068   DAZ associated protein 1 isoform a 
DAZAP1                0.068   DAZ associated protein 1 isoform b 
RBM39                 0.057   RNA binding motif protein 39 isoform b 
RBM39                 0.057   RNA binding motif protein 39 isoform a 
PABPC1                0.057   poly(A) binding protein, cytoplasmic 1 
PABPC4                0.055   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.055   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.055   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.055   poly(A) binding protein, cytoplasmic 3 
PABPC1L               0.052   poly(A)-binding protein, cytoplasmic 1-like 
TRA2B                 0.052   splicing factor, arginine/serine-rich 10 
RBM23                 0.051   RNA binding motif protein 23 isoform 3 
RBM23                 0.051   RNA binding motif protein 23 isoform 1 
RBM23                 0.051   RNA binding motif protein 23 isoform 2 
SFPQ                  0.051   splicing factor proline/glutamine rich (polypyrimidin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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