Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: UBN2 Sequence: fasta or formatted (1347aa) NCBI GI: 236459851
Description:

ubinuclein 2

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         93           4
 C cysteine            0.8         11           1
 D aspartate           4.2         57           3
 E glutamate           6.4         86           2
 F phenylalanine       2.4         33           2
 G glycine             5.2         70           2
 H histidine           2.3         31           2
 I isoleucine          2.7         37           1
 K lysine              8.1        109           4
 L leucine             9.8        132           3
 M methionine          1.9         25           1
 N asparagine          3.5         47           2
 P proline            10.8        146           4
 Q glutamine           5.0         68           2
 R arginine            4.5         61           3
 S serine             12.2        165           4
 T threonine           6.5         88           3
 V valine              5.0         67           2
 W tryptophan          0.2          3           1
 Y tyrosine            1.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubinuclein 2 
UBN1                  0.220   ubinuclein 1 
UBN1                  0.220   ubinuclein 1 
MUC17                 0.023   mucin 17 
MUC21                 0.022   mucin 21 
MUC4                  0.022   mucin 4 isoform a 
MUC16                 0.020   mucin 16 
MUC12                 0.019   PREDICTED: mucin 12 
MUC12                 0.018   PREDICTED: mucin 12 
MUC12                 0.017   PREDICTED: mucin 12 
SRCAP                 0.017   Snf2-related CBP activator protein 
MUC2                  0.017   mucin 2 precursor 
MUC6                  0.016   mucin 6, gastric 
MLL4                  0.016   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100131514          0.015   PREDICTED: similar to hCG1747327, partial 
LOC100133714          0.015   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.015   PREDICTED: mucin 12, cell surface associated 
KIAA0182              0.015   genetic suppressor element 1 isoform 2 
KIAA0182              0.015   genetic suppressor element 1 isoform 1 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
C13orf23              0.014   hypothetical protein LOC80209 isoform 2 
C13orf23              0.014   hypothetical protein LOC80209 isoform 1 
PRR12                 0.014   proline rich 12 
MUC5AC                0.014   mucin 5AC 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
SETD1B                0.013   SET domain containing 1B 
POM121C               0.013   POM121 membrane glycoprotein (rat)-like 
LOC284297             0.013   hypothetical protein LOC284297 
LOC645529             0.013   PREDICTED: similar to Putative acrosin-like proteas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press