Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRIM26 Sequence: fasta or formatted (539aa) NCBI GI: 4508005
Description:

tripartite motif-containing 26

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         30           2
 C cysteine            2.6         14           1
 D aspartate           5.8         31           2
 E glutamate          14.3         77          11
 F phenylalanine       3.2         17           1
 G glycine             6.7         36           2
 H histidine           1.9         10           1
 I isoleucine          2.6         14           1
 K lysine              6.5         35           3
 L leucine            11.1         60           3
 M methionine          0.9          5           1
 N asparagine          1.1          6           1
 P proline             4.3         23           1
 Q glutamine           4.5         24           2
 R arginine            8.0         43           2
 S serine              5.6         30           3
 T threonine           4.8         26           2
 V valine              5.9         32           2
 W tryptophan          2.0         11           1
 Y tyrosine            2.8         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 26 
TRIM10                0.258   tripartite motif-containing 10 isoform 1 
TRIM15                0.238   tripartite motif protein 15 
TRIM10                0.218   tripartite motif-containing 10 isoform 2 
TRIM27                0.201   ret finger protein 
TRIM39                0.201   tripartite motif-containing 39 isoform 1 
TRIM39                0.198   tripartite motif-containing 39 isoform 2 
TRIM7                 0.195   tripartite motif-containing 7 isoform 1 
TRIM21                0.187   tripartite motif protein 21 
TRIM38                0.173   tripartite motif-containing 38 
TRIM68                0.160   ring finger protein 137 
TRIM11                0.160   tripartite motif-containing 11 
TRIM58                0.157   tripartite motif-containing 58 
TRIM75                0.152   tripartite motif-containing 75 
TRIM60                0.146   ring finger protein 129 
TRIM41                0.146   tripartite motif-containing 41 isoform 1 
TRIM31                0.146   tripartite motif protein 31 
TRIM4                 0.144   tripartite motif protein TRIM4 isoform beta 
TRIM6                 0.143   tripartite motif-containing 6 isoform 2 
TRIM6                 0.143   tripartite motif-containing 6 isoform 1 
TRIM5                 0.132   tripartite motif protein TRIM5 isoform alpha 
TRIM4                 0.131   tripartite motif protein TRIM4 isoform alpha 
TRIM22                0.125   tripartite motif-containing 22 
TRIM34                0.125   tripartite motif protein 34 isoform 1 
TRIM34                0.125   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.125   tripartite motif-containing 6 and tripartite motif-c...
TRIML1                0.120   tripartite motif family-like 1 
TRIM69                0.113   tripartite motif-containing 69 isoform a 
TRIM5                 0.113   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.113   tripartite motif protein TRIM5 isoform gamma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press