Guide to the Human Genome
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Name: MBD6 Sequence: fasta or formatted (1003aa) NCBI GI: 46852161
Description:

methyl-CpG binding domain protein 6

Referenced in:

DNA Methylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         91           3
 C cysteine            1.2         12           1
 D aspartate           2.0         20           1
 E glutamate           3.7         37           2
 F phenylalanine       1.9         19           1
 G glycine            11.6        116           4
 H histidine           1.8         18           2
 I isoleucine          0.9          9           1
 K lysine              1.7         17           1
 L leucine            12.6        126           2
 M methionine          0.9          9           1
 N asparagine          2.3         23           2
 P proline            21.3        214           5
 Q glutamine           3.0         30           1
 R arginine            5.9         59           3
 S serine             12.1        121           3
 T threonine           4.0         40           2
 V valine              3.3         33           2
 W tryptophan          0.4          4           1
 Y tyrosine            0.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   methyl-CpG binding domain protein 6 
MBD5                  0.073   methyl-CpG binding domain protein 5 
FLJ22184              0.066   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.060   nascent polypeptide-associated complex alpha subuni...
FMN2                  0.058   formin 2 
MLL2                  0.054   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.054   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.053   PREDICTED: hypothetical protein FLJ22184 
COL4A5                0.048   type IV collagen alpha 5 isoform 3 precursor 
COL4A5                0.048   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.047   type IV collagen alpha 5 isoform 1 precursor 
SRCAP                 0.045   Snf2-related CBP activator protein 
CIC                   0.044   capicua homolog 
COL1A1                0.040   alpha 1 type I collagen preproprotein 
ATN1                  0.040   atrophin-1 
ATN1                  0.040   atrophin-1 
KIAA1522              0.040   hypothetical protein LOC57648 
RAPH1                 0.039   Ras association and pleckstrin homology domains 1 is...
COL27A1               0.038   collagen, type XXVII, alpha 1 
COL3A1                0.038   collagen type III alpha 1 preproprotein 
RERE                  0.038   atrophin-1 like protein isoform b 
RERE                  0.038   atrophin-1 like protein isoform a 
RERE                  0.038   atrophin-1 like protein isoform a 
C6orf132              0.037   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.037   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.037   PREDICTED: hypothetical protein LOC647024 
PRR12                 0.037   proline rich 12 
GLTSCR1               0.037   glioma tumor suppressor candidate region gene 1 [Ho...
WNK2                  0.037   WNK lysine deficient protein kinase 2 
KDM6B                 0.036   lysine (K)-specific demethylase 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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