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Search of human proteins with 54112107
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens] 293 2e-80
gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens] 274 2e-74
gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens] 274 2e-74
gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens] 274 2e-74
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 274 2e-74
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 274 2e-74
gi|14249622 ajuba isoform 1 [Homo sapiens] 37 0.007
gi|38194224 G protein-coupled receptor 25 [Homo sapiens] 35 0.021
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.061
gi|116812620 hypothetical protein LOC147965 [Homo sapiens] 33 0.061
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 33 0.079
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 33 0.079
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 32 0.14
gi|61744445 ficolin 2 isoform a precursor [Homo sapiens] 32 0.14
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 32 0.14
gi|122937215 prospero homeobox 2 [Homo sapiens] 32 0.14
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 32 0.18
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 32 0.18
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 32 0.18
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 32 0.18
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 31 0.30
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 31 0.30
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 31 0.30
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 31 0.30
gi|224593756 hypothetical protein LOC164127 [Homo sapiens] 31 0.39
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 0.39
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 31 0.39
gi|134254446 patched isoform L [Homo sapiens] 30 0.52
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 30 0.52
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 30 0.52
>gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens]
Length = 142
Score = 293 bits (751), Expect = 2e-80
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQACFPQVLLSL 142
AALHSDSQDGHQACFPQVLLSL
Sbjct: 121 AALHSDSQDGHQACFPQVLLSL 142
>gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens]
Length = 135
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens]
Length = 147
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens]
Length = 178
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 36.6 bits (83), Expect = 0.007
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 64 LRSELRRERGAESRLGGSGTPGT-SGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAA 122
L + R +G SR G GTPG G LS LGG P + G P +PLEP
Sbjct: 11 LLEKFGRRKGESSRSGSDGTPGPGKGRLSGLGGPRKSGPRGATGG---PGDEPLEPAREQ 67
Query: 123 LHSDSQDGHQACF 135
D++ + F
Sbjct: 68 GSLDAERNQRGSF 80
>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
Length = 361
Score = 35.0 bits (79), Expect = 0.021
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 2 GYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCY 61
G P + R L P G Q CG P+ A +G S LL L F L L ++TL CY
Sbjct: 171 GLPSLVYRGLQPLP-----GGQDSQCGEEPSHAFQGLSLLLLLLTFVLPL---VVTLFCY 222
Query: 62 LELRSELRR 70
+ LRR
Sbjct: 223 CRISRRLRR 231
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.5 bits (75), Expect = 0.061
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 72 RGAESRLGGSGTPGTSGTLSS--LGGLDPDSPITSHLGQPSPKQQPLEPGE 120
+G+ LG +G PG G L G D I LG P PK + E GE
Sbjct: 1284 KGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGE 1334
Score = 30.8 bits (68), Expect = 0.39
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHSD 126
RG G SG PGT G G P PI G P +P PGEA + D
Sbjct: 1110 RGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGD 1169
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGE 120
E G + G G PG G G PD P G P P+ +P PG+
Sbjct: 1043 EPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQ 1097
>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
Length = 349
Score = 33.5 bits (75), Expect = 0.061
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 26 GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRERGAESRLGGSGTPG 85
G GG P A G SC F G + LA L TL E +RE GAE G G
Sbjct: 22 GYGGVPGAASRGASCPDFRGLC-VRLAAELATLGAL-----EQQREAGAEVLSAGDGPGA 75
Query: 86 TSGTLSSLGGL 96
L LG L
Sbjct: 76 EEDFLRQLGSL 86
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 33.1 bits (74), Expect = 0.079
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
++ GA+ G G PG G + S G +S + +G PK QP +PG
Sbjct: 726 IQGHHGAKGERGEKGEPGVRGAIGSKG----ESGVDGLMGPAGPKGQPGDPG 773
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 33.1 bits (74), Expect = 0.079
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G + G G PG SG + G SH G P PK +P PG
Sbjct: 1048 GDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPG 1094
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G G GTPG G G P H G+P K QP PG
Sbjct: 984 GFPGERGDKGTPGMQGRRGEPGRYGPPG---FHRGEPGEKGQPGPPG 1027
Score = 26.2 bits (56), Expect = 9.7
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 73 GAESRLGGSGTPGTS---------GTLSS--LGGLDPDSPITSHLGQPSPKQQPLEPGEA 121
G++ G GTPGT+ G + GG SP+ G P P P G+
Sbjct: 701 GSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPV----GPPGPPGSPGVNGQK 756
Query: 122 ALHSDSQDGH 131
+ D GH
Sbjct: 757 GIPGDPAFGH 766
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 32.3 bits (72), Expect = 0.14
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP-----ITSHLGQPSPKQQPLEPGE 120
ERG + +G G PG G LG P P +T GQP PK GE
Sbjct: 662 ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGE 716
Score = 28.1 bits (61), Expect = 2.6
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 29/103 (28%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRE 71
P P E+G G G G P R G S +GF G
Sbjct: 857 PLGPPGEKGKLGVPGLPGYPGRQGPKGS----IGFPGFP--------------------- 891
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDP--DSPITSHLGQPSPK 112
GA GG GTPG G G P + G+P PK
Sbjct: 892 -GANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPK 933
Score = 26.9 bits (58), Expect = 5.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP--ITSHLGQPSPKQQPLEPGEA 121
E+G +G G PG G G D P +G P + EPGEA
Sbjct: 1238 EKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEA 1290
Score = 26.6 bits (57), Expect = 7.4
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLG--GLDPDSPITSHLGQPSPKQQPLEPGEAALHSD 126
RG G G PG +G G GL H G P P P PG+ D
Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGD 665
Score = 26.6 bits (57), Expect = 7.4
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R E+G G +G PG G G P+ G P P +P G+ D
Sbjct: 1308 RGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV-GFPGDPGPPGEPGPAGQDGPPGDKG 1366
Query: 129 D 129
D
Sbjct: 1367 D 1367
Score = 26.6 bits (57), Expect = 7.4
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
E+G + G G G+SG G P PI G P P P PG
Sbjct: 1496 EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI----GPPGPPGLPGPPG 1540
>gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]
Length = 313
Score = 32.3 bits (72), Expect = 0.14
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 42 LFLGFFGLSLALHLLTLC-----CYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGL 96
L L F G++ AL C LE +L RG G G G +GT G
Sbjct: 15 LLLSFLGMAWALQAADTCPEVKMVGLEGSDKLTILRGCPGLPGAPGPKGEAGTNGKRGER 74
Query: 97 DPDSPITSHLGQPSPKQQPLEP 118
P P G P P P EP
Sbjct: 75 GPPGP-PGKAGPPGPNGAPGEP 95
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.3 bits (72), Expect = 0.14
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPG 119
++G G +G PG G S+G + P P H G P P P PG
Sbjct: 1375 QKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPG 1425
Score = 29.3 bits (64), Expect = 1.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
ERG + + G +G PG DP +P T+ G+P +P G A + DG
Sbjct: 677 ERGLKGQKGDAGNPG-----------DPGTPGTT--GRPGLSGEPGVQGPAGPKGEKGDG 723
Query: 131 HQAC 134
AC
Sbjct: 724 CTAC 727
Score = 28.1 bits (61), Expect = 2.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLG--GLDPD---SPITSHLGQPSPKQQPLEPG 119
RG+ G G PG G + S G GL + + +T G+P P QP PG
Sbjct: 1041 RGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPG 1093
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 32.3 bits (72), Expect = 0.14
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 8 RRELLPAAAPRE--RGSQGCGCGGAPARAGEGNSC 40
+ +L AA PR+ +G GCG G P A +GN C
Sbjct: 147 QEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGC 181
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 32.0 bits (71), Expect = 0.18
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPG 119
E G++ G G PG SG L GL D+ T + G P PK QP E G
Sbjct: 1046 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESG 1091
Score = 29.3 bits (64), Expect = 1.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 71 ERGAESRLGGSGTPGTSG-TLSSLGGLDPDSP----ITSHLGQPSPKQQPLEPGEAALHS 125
+RG G +G PG G +L SL P P + G+P P P PG ++
Sbjct: 1230 DRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQG 1289
Query: 126 DSQD 129
D+ D
Sbjct: 1290 DTGD 1293
Score = 28.1 bits (61), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 460 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 499
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 32.0 bits (71), Expect = 0.18
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPG 119
E G++ G G PG SG L GL D+ T + G P PK QP E G
Sbjct: 1045 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESG 1090
Score = 29.3 bits (64), Expect = 1.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 71 ERGAESRLGGSGTPGTSG-TLSSLGGLDPDSP----ITSHLGQPSPKQQPLEPGEAALHS 125
+RG G +G PG G +L SL P P + G+P P P PG ++
Sbjct: 1229 DRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQG 1288
Query: 126 DSQD 129
D+ D
Sbjct: 1289 DTGD 1292
Score = 28.1 bits (61), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 459 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 498
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 32.0 bits (71), Expect = 0.18
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 32.0 bits (71), Expect = 0.18
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 64 LRSE--LRRERGAESRLGGSGTPGTSG-TLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
LR E +R ++G G G PG SG T+ G G+P P+ +P PG+
Sbjct: 142 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGD 201
Query: 121 AALHSDSQDG 130
L D+ G
Sbjct: 202 RGLKGDNGVG 211
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 31.2 bits (69), Expect = 0.30
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEA 121
ERG G GTPGT G G P G+ P P +PGEA
Sbjct: 423 ERGGPGERGPRGTPGTRGPRGDPGEAGPQ----GDQGREGPVGVPGDPGEA 469
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 31.2 bits (69), Expect = 0.30
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 66 SELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
S+ ERG G G PG G + + G+D D G P P +P +PG
Sbjct: 262 SQTTDERGPPGEQGPPGPPGPPG-VPGIDGIDGDRGPKGPPGPPGPAGEPGKPG 314
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAAL 123
+RGAE G G PG G + L G+D I G +P PG+A L
Sbjct: 518 DRGAEGARGIPGLPGPKGD-TGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGL 569
Score = 27.3 bits (59), Expect = 4.4
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 73 GAESRLGGSGTPGTSGTLSSLG-----------GLDPDSPITSHLGQPSPKQQPLEPGE 120
G+ LG G+PG G L SLG GL +G+P PK + GE
Sbjct: 625 GSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGE 683
Score = 26.6 bits (57), Expect = 7.4
Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQACFP 136
G G PGT+G LG + P G P P P G H AC P
Sbjct: 361 GPPGPPGTAGLPGELGRVGPVGD-PGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPP 417
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 31.2 bits (69), Expect = 0.30
Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 42 LFLGFFGLSLAL---HLLTLCCYLELRSELRRERGAESRLGGSGTP---GTSGTLSSLGG 95
L L F SLAL L L L+L + LR R A +RLG GT+ SL
Sbjct: 1043 LGLSFSACSLALDQAQLTPLLRALKLHTALRELRLAGNRLGDKCVAELVAALGTMPSLAL 1102
Query: 96 LDPDSPITSHLGQPSPKQQPLE-PGEAALHS 125
LD S +HLG +Q + PG+A L S
Sbjct: 1103 LDLSS---NHLGPEGLRQLAMGLPGQATLQS 1130
>gi|224593756 hypothetical protein LOC164127 [Homo sapiens]
Length = 623
Score = 30.8 bits (68), Expect = 0.39
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 79 GGSGTP--GTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQAC 134
GG+GTP GT + GG P+ HLG+ SP P E +++ S H AC
Sbjct: 151 GGAGTPLSGTFRVEKAQGGDQWAVPLGRHLGRWSPSSVPSE--RSSVPSQKFKRHSAC 206
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.8 bits (68), Expect = 0.39
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSP-----------ITSHLGQPSPKQQPLEPG 119
G +G SG PG GT G + P P H GQP P P PG
Sbjct: 1137 GPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPG 1194
Score = 28.5 bits (62), Expect = 2.0
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--------TSHLGQPSPKQQPLEPGE 120
+G GG G+PG G GG D T +G P P QP + GE
Sbjct: 725 QGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE 781
Score = 28.5 bits (62), Expect = 2.0
Identities = 29/113 (25%), Positives = 34/113 (30%), Gaps = 37/113 (32%)
Query: 13 PAAAPRERGSQG----CGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSEL 68
P +P ERG G G GAP + GE
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGG----------------------------- 823
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEA 121
+ ERGA G G PG +G G P P G + P PG A
Sbjct: 824 KGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP----QGVKGERGSPGGPGAA 872
Score = 28.1 bits (61), Expect = 2.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G +GTPG G GG LG P PK EPG
Sbjct: 717 GAAGTPGLQGMPGERGG----------LGSPGPKGDKGEPG 747
Score = 26.2 bits (56), Expect = 9.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
RG++ + G G PGT+G S G P S +P Q+ EPG
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRG-EPG 372
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 30.8 bits (68), Expect = 0.39
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGEAALHSD 126
G G PG G + G L P P+ G P PK P +PG L D
Sbjct: 944 GEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGD 996
Score = 27.7 bits (60), Expect = 3.3
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAAL 123
+RG G +G PG +G L G P LG+ P P PGE L
Sbjct: 900 QRGELGFQGQTGPPGPAGVLGPQGKTGEVGP----LGERGPPGPPGPPGEQGL 948
Score = 26.9 bits (58), Expect = 5.7
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPK 112
E+G G G PG G G P P T G+P P+
Sbjct: 561 EKGQRGDFGHVGQPGPPGEDGERGAEGPPGP-TGQAGEPGPR 601
Score = 26.6 bits (57), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGL 96
L+ ++G +G +G+PG G L GG+
Sbjct: 993 LKGDKGPPGPVGANGSPGERGPLGPAGGI 1021
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
RG + G GTPG G + G + + G P P P PG
Sbjct: 1177 RGPQGPTGSEGTPGLPGGVGQPGAVG-EKGERGDAGDPGPPGAPGIPG 1223
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
G G G PG G G P PI S LG P P
Sbjct: 1415 GEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGS-LGHPGP 1452
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQP 115
G + G G PG G + SLG P + LGQ K P
Sbjct: 1427 GVQGPPGPKGDPGPPGPIGSLGHPGPPG-VAGPLGQKGSKGSP 1468
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 30.4 bits (67), Expect = 0.52
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 14 AAAPRERGSQGCGCGGAPARAGEG 37
AA P++RG G GC GAP R G
Sbjct: 7 AAEPQDRGGGGSGCIGAPGRPAGG 30
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 0.52
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 60 CYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQP 115
C+LE R + RR+ GAE G+G P + L + G DP SP + P P+Q+P
Sbjct: 173 CWLENRRQRRRKAGAER--AGAG-PTLTPPLPA-GSPDPPSPAAT--AAPQPEQRP 222
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 0.52
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 60 CYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQP 115
C+LE R + RR+ GAE G+G P + L + G DP SP + P P+Q+P
Sbjct: 173 CWLENRRQRRRKAGAER--AGAG-PTLTPPLPA-GSPDPPSPAAT--AAPQPEQRP 222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,018,777
Number of Sequences: 37866
Number of extensions: 368424
Number of successful extensions: 2571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1972
Number of HSP's gapped (non-prelim): 702
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.