Guide to the Human Genome
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Name: C1orf65 Sequence: fasta or formatted (623aa) NCBI GI: 224593756
Description:

hypothetical protein LOC164127

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         42           2
 C cysteine            2.1         13           1
 D aspartate           3.2         20           1
 E glutamate          10.0         62           3
 F phenylalanine       1.3          8           1
 G glycine             4.8         30           2
 H histidine           3.4         21           2
 I isoleucine          1.8         11           1
 K lysine              7.4         46           3
 L leucine             9.0         56           3
 M methionine          1.1          7           1
 N asparagine          1.4          9           1
 P proline             6.4         40           3
 Q glutamine          11.2         70           3
 R arginine           12.7         79           3
 S serine              8.7         54           2
 T threonine           2.6         16           2
 V valine              4.0         25           3
 W tryptophan          1.6         10           1
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC164127 
TCHH                  0.061   trichohyalin 
LOC283767             0.044   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.043   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CEP164                0.043   centrosomal protein 164kDa 
LOC100130174          0.042   PREDICTED: hypothetical protein 
LOC100130174          0.042   PREDICTED: hypothetical protein 
LOC100130174          0.042   PREDICTED: hypothetical protein 
GIGYF2                0.041   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.041   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.041   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.041   GRB10 interacting GYF protein 2 isoform b 
CEP250                0.041   centrosomal protein 2 
LOC440243             0.041   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283685             0.041   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH14                 0.040   myosin, heavy chain 14 isoform 1 
MYH14                 0.040   myosin, heavy chain 14 isoform 2 
MYH14                 0.040   myosin, heavy chain 14 isoform 3 
LOC727832             0.040   golgi autoantigen, golgin subfamily a-like 
PLEC1                 0.040   plectin 1 isoform 11 
PLEC1                 0.040   plectin 1 isoform 10 
PLEC1                 0.040   plectin 1 isoform 8 
PLEC1                 0.040   plectin 1 isoform 7 
PLEC1                 0.040   plectin 1 isoform 6 
PLEC1                 0.040   plectin 1 isoform 3 
PLEC1                 0.040   plectin 1 isoform 2 
PLEC1                 0.040   plectin 1 isoform 1 
LOC645202             0.039   PREDICTED: hypothetical protein LOC645202 
RBM25                 0.037   RNA binding motif protein 25 
STK10                 0.037   serine/threonine kinase 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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