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Search of human proteins with 52630429
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52630429 nuclear factor, interleukin 3 regulated [Homo
sapiens]
(462 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens] 900 0.0
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ... 109 6e-24
gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens] 64 3e-10
gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens] 64 3e-10
gi|4504421 hepatic leukemia factor [Homo sapiens] 62 1e-09
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 59 9e-09
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 42 0.002
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 37 0.038
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens] 36 0.084
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens] 36 0.084
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 35 0.11
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i... 35 0.14
gi|18375648 protein tyrosine phosphatase, non-receptor type 13 i... 35 0.14
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i... 35 0.14
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 35 0.14
gi|169646281 coiled-coil domain containing 14 [Homo sapiens] 35 0.19
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 35 0.19
gi|14195601 protein phosphatase 1, regulatory (inhibitor) subuni... 35 0.19
gi|14195599 protein phosphatase 1, regulatory (inhibitor) subuni... 35 0.19
gi|219555661 intraflagellar transport 81-like isoform 1 [Homo sa... 34 0.24
gi|32526901 intraflagellar transport 81-like isoform 1 [Homo sap... 34 0.24
gi|194239643 activating transcription factor 7 isoform 3 [Homo s... 34 0.24
gi|5802980 activating transcription factor 7 isoform 2 [Homo sap... 34 0.24
gi|194239640 activating transcription factor 7 isoform 1 [Homo s... 34 0.24
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 34 0.24
gi|4758054 cAMP responsive element binding protein 1 isoform A [... 34 0.32
gi|19745184 cAMP responsive element binding protein 1 isoform B ... 34 0.32
gi|4885073 activating transcription factor 1 [Homo sapiens] 34 0.32
gi|194353992 amyloid beta A4 precursor protein-binding, family A... 34 0.32
gi|22035550 amyloid beta A4 precursor protein-binding, family A,... 34 0.32
>gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens]
Length = 462
Score = 900 bits (2326), Expect = 0.0
Identities = 462/462 (100%), Positives = 462/462 (100%)
Query: 1 MQLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSAC 60
MQLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSAC
Sbjct: 1 MQLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSAC 60
Query: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK 180
SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK
Sbjct: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK 180
Query: 181 HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYT 240
HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYT
Sbjct: 181 HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYT 240
Query: 241 ASIYQNYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIH 300
ASIYQNYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIH
Sbjct: 241 ASIYQNYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIH 300
Query: 301 SPVELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSSPIDMTSK 360
SPVELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSSPIDMTSK
Sbjct: 301 SPVELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSSPIDMTSK 360
Query: 361 RHFELEKHSAPSMVHSSLTPFSVQVTNIQDWSLKSEHWHQKELSGKTQNSFKTGVVEMKD 420
RHFELEKHSAPSMVHSSLTPFSVQVTNIQDWSLKSEHWHQKELSGKTQNSFKTGVVEMKD
Sbjct: 361 RHFELEKHSAPSMVHSSLTPFSVQVTNIQDWSLKSEHWHQKELSGKTQNSFKTGVVEMKD 420
Query: 421 SGYKVSDPENLYLKQGIANLSAEVVSLKRLIATQPISASDSG 462
SGYKVSDPENLYLKQGIANLSAEVVSLKRLIATQPISASDSG
Sbjct: 421 SGYKVSDPENLYLKQGIANLSAEVVSLKRLIATQPISASDSG 462
>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
sapiens]
Length = 369
Score = 109 bits (272), Expect = 6e-24
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 54 KNKSSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENA 113
+ + + RR+REF+P+EKKD +YWEKRRKNNEAAKRSREKRRLND +E +L AL EENA
Sbjct: 57 RGRGPSIRRQREFMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAAIEGRLAALMEENA 116
Query: 114 TLKAELLSLKLKFGLISST 132
LK EL +LKL+FGL+ T
Sbjct: 117 LLKGELKALKLRFGLLPLT 135
>gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens]
Length = 273
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 191 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 250
Query: 121 SLKLKFG 127
L+ + G
Sbjct: 251 ELRKEVG 257
>gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens]
Length = 303
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 221 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 280
Query: 121 SLKLKFG 127
L+ + G
Sbjct: 281 ELRKEVG 287
>gi|4504421 hepatic leukemia factor [Homo sapiens]
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
Query: 121 SLKLKFG 127
L+ + G
Sbjct: 273 DLRKELG 279
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 58.9 bits (141), Expect = 9e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 67 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 123
+P+E+KD YW +R KNNEAAKRSR+ RRL + + + L +ENA L+ E+++++
Sbjct: 249 VPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVR 305
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 41.6 bits (96), Expect = 0.002
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 177 SVIKHSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDR 236
S + PQS L + SS T S +Q S S ++ F+ Q P+++ P
Sbjct: 398 STFEGFPQSPLQ-IPMTSSFSSTLLSILQSSPESAQSAFEGFPQSPLQI------PVSSS 450
Query: 237 GSYTA-SIYQNY---MGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQ 292
SYT S++Q+ ++F G+ SP + V+ SSS+S S S E
Sbjct: 451 FSYTLLSLFQSSPERTHSTFEGFPQSPLQIPVSSSSSSSTLLSLFQSSPECTQSTFEGFP 510
Query: 293 QVPKGPIHSPVELKHVHA---TVVKVPEVNSSALPH 325
Q P SP E ++ H+ V +PE S PH
Sbjct: 511 QSPLQIPQSPPEGENTHSPLQIVPSLPEWEDSLSPH 546
Score = 32.7 bits (73), Expect = 0.71
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 37/168 (22%)
Query: 158 NVSSFVDEHEPSMVSSSCISVIKHSPQSSLSD------------VSEVSSVEHTQESSVQ 205
+V S + S SS+ +S+ + SP+S+ S VS SS T S Q
Sbjct: 123 DVQSPLQNPASSFFSSALLSIFQSSPESTQSPFEGFPQSVLQIPVSAASS--STLVSIFQ 180
Query: 206 GSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASIYQNY---MGNSFSGYSHSPPLL 262
S S ++ F+ Q P+++ S SI+Q+ ++F G++ SP +
Sbjct: 181 SSPESTQSPFEGFPQSPLQIPVSR-----SFSSTLLSIFQSSPERTQSTFEGFAQSPLQI 235
Query: 263 QVNRSSSN---------SPRTSETDDGVVGKSSDGEDEQQVPKGPIHS 301
V+ SSS+ S RT T +G + Q+P P S
Sbjct: 236 PVSPSSSSTLLSLFQSFSERTQSTFEGF------AQSSLQIPVSPSFS 277
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 37.0 bits (84), Expect = 0.038
Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 14/219 (6%)
Query: 6 MQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGK-NKSSACRRKR 64
+ V+KEQAS + S + + LN A E+ G++ L + +G+ ++ R K
Sbjct: 632 LPAVEKEQASTEHQSRTSEEISLNDAGVELKSTKQDGDKSLSAVPDIGQCHQDELERLKS 691
Query: 65 EFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENK---------LIALGEENATL 115
+ + E E KN + ++++E LN L+ E K AL EE L
Sbjct: 692 QILELELNFHKAQEIYEKNLD--EKAKEISNLNQLIEEFKKNADNNSSAFTALSEERDQL 749
Query: 116 KAELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSC 175
+++ L + L + + L+ + DY++ ++ + ++ + +
Sbjct: 750 LSQVKELSMVTELRAQVKQLE--MNLAEAERQRRLDYESQTAHDNLLTEQIHSLSIEAKS 807
Query: 176 ISVIKHSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENK 214
V Q+ L DV S + T S+Q ++ E++
Sbjct: 808 KDVKIEVLQNELDDVQLQFSEQSTLIRSLQSQLQNKESE 846
Score = 30.8 bits (68), Expect = 2.7
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 44/192 (22%)
Query: 67 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENK---------LIAL-------GE 110
+P+E+ EK + + E R+ E+ LND +E K L A+ +
Sbjct: 625 MPNEESSLPAVEKEQASTEHQSRTSEEISLNDAGVELKSTKQDGDKSLSAVPDIGQCHQD 684
Query: 111 ENATLKAELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSM 170
E LK+++L L+L F AQEI + + + SN++ ++E + +
Sbjct: 685 ELERLKSQILELELNF------HKAQEIYEKN------LDEKAKEISNLNQLIEEFKKNA 732
Query: 171 -VSSSCISVIKHSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYT 229
+SS + + LS V E+S V + +KQ M L
Sbjct: 733 DNNSSAFTALSEERDQLLSQVKELSMVTELRAQ---------------VKQLEMNLAEAE 777
Query: 230 REPRDDRGSYTA 241
R+ R D S TA
Sbjct: 778 RQRRLDYESQTA 789
Score = 30.0 bits (66), Expect = 4.6
Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 15/229 (6%)
Query: 8 TVKKEQASLDASSNVDKMMVLNSALTE-VSEDSTTGEELLLSEGSVGKNKSSACRRKREF 66
T + +A LD + + M N+ E V E E+L++ + + K ++K E
Sbjct: 22 TDQNMRAPLDPELHQESDMEFNNTTQEDVQERLAYAEQLVVELKDIIRQKDVQLQQKDEA 81
Query: 67 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLKLKF 126
+ +E+K A K+ K + AK + + + ++ + + E + E LS K
Sbjct: 82 LQEERKAADNKIKKLKLHAKAKLTSLNKYIEEMKAQGGTVLPTEPQS---EEQLSKHDK- 137
Query: 127 GLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQSS 186
SST EI+K+ + + T ++ ++ +P+ S+ + Q
Sbjct: 138 ---SSTEEEMEIEKIKHKLQEKEELISTLQAQLTQ-AQAEQPAQSSTEMEEFVMMKQQ-- 191
Query: 187 LSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDD 235
L + E S Q S Q + + Q+++++ E+ R D+
Sbjct: 192 LQEKEEFISTLQAQLSQTQ----AEQAAQQVVREKDARFETQVRLHEDE 236
>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
Length = 1173
Score = 35.8 bits (81), Expect = 0.084
Identities = 71/371 (19%), Positives = 139/371 (37%), Gaps = 69/371 (18%)
Query: 43 EELLLSEGSVGKNKSSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLE 102
++ ++E + N S + + +++ K + + + R RE +RL +E
Sbjct: 199 KQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQME 258
Query: 103 NKLIALGEENATLKAELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSF 162
++ EN+ +A LSLK I ++ Q+ N D K+N+S+
Sbjct: 259 QRI---NSENSFSEASSLSLKSS---IERKYKPRQEQRKQN-------DIIPGKNNLSNV 305
Query: 163 VDEH-----------EPSMVSSSCISVIKHSPQSSL-SDVSEV--SSVEHTQESSVQGSC 208
+ H EP+ S + ++S+ SD+ S + +ES ++
Sbjct: 306 ENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESFLEKRP 365
Query: 209 RSPENKFQIIKQ-------EPMELESYTREPRDDRGSYTASIYQNYMGNSFSGYSHS--- 258
P K + IK + + LE ++EP D+ +A + + GNS + +
Sbjct: 366 DGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHSTRNSDQ 425
Query: 259 ------------PPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIHSPVELK 306
P L +++ S + S S+ E E ++P
Sbjct: 426 IQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLP----------- 474
Query: 307 HVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSS-PIDMTSKRHFEL 365
+ +VP SS +P + AK + V D E ++++ S + T + +
Sbjct: 475 ----LLSRVPSAGSSLVP----LNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKA 526
Query: 366 EKHSAPSMVHS 376
+ + A S V S
Sbjct: 527 KTNKADSNVSS 537
>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
Length = 1186
Score = 35.8 bits (81), Expect = 0.084
Identities = 71/371 (19%), Positives = 139/371 (37%), Gaps = 69/371 (18%)
Query: 43 EELLLSEGSVGKNKSSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLE 102
++ ++E + N S + + +++ K + + + R RE +RL +E
Sbjct: 199 KQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQME 258
Query: 103 NKLIALGEENATLKAELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSF 162
++ EN+ +A LSLK I ++ Q+ N D K+N+S+
Sbjct: 259 QRI---NSENSFSEASSLSLKSS---IERKYKPRQEQRKQN-------DIIPGKNNLSNV 305
Query: 163 VDEH-----------EPSMVSSSCISVIKHSPQSSL-SDVSEV--SSVEHTQESSVQGSC 208
+ H EP+ S + ++S+ SD+ S + +ES ++
Sbjct: 306 ENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESFLEKRP 365
Query: 209 RSPENKFQIIKQ-------EPMELESYTREPRDDRGSYTASIYQNYMGNSFSGYSHS--- 258
P K + IK + + LE ++EP D+ +A + + GNS + +
Sbjct: 366 DGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHSTRNSDQ 425
Query: 259 ------------PPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIHSPVELK 306
P L +++ S + S S+ E E ++P
Sbjct: 426 IQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLP----------- 474
Query: 307 HVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSS-PIDMTSKRHFEL 365
+ +VP SS +P + AK + V D E ++++ S + T + +
Sbjct: 475 ----LLSRVPSAGSSLVP----LNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKA 526
Query: 366 EKHSAPSMVHS 376
+ + A S V S
Sbjct: 527 KTNKADSNVSS 537
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 70 EKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATL--KAELLSLKL 124
+K Y +R +NN A ++SR+K ++ +L ++K++ L EN L K E LS +L
Sbjct: 268 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 324
>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
isoform 4 [Homo sapiens]
Length = 2490
Score = 35.0 bits (79), Expect = 0.14
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 47/262 (17%)
Query: 142 SNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQSSLSDVSEVSSVEHTQE 201
S TA Y + + + + +S + + S I++ PQ ++ + HT+E
Sbjct: 315 SGETATYRRCHPEAVTVRTSTTPRKKEARYSDGSIALDIFGPQ-------KMDPIYHTRE 367
Query: 202 -------SSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASIYQNYMGNSFSG 254
SS R + K Q+++ E M +E R Y+ Y G+ FS
Sbjct: 368 LPTSSAISSALDRIRERQKKLQVLR-EAMNVEEPVRR------------YKTYHGDVFST 414
Query: 255 YSHSPPLL-------QVNRSSSNSPRTSETDDGVVGKSSD-GEDEQQVPKGPIHSPVELK 306
S SP ++ QV RS ++ + E+ G+ G + + Q P +P E
Sbjct: 415 SSESPSIISSESDFRQVRRSEAS--KRFESSSGLPGVDETLSQGQSQRPSRQYETPFEGN 472
Query: 307 HVHATV-VKVPEVNSSALPHKLRIKAKAMQ------IKVEAFDNEFEATQKLSSPIDMTS 359
++ + +K E L K+ ++ + IK D + ++++ MT
Sbjct: 473 LINQEIMLKRQEEELMQLQAKMALRQSRLSLYPGDTIKASMLDITRDPLREIALETAMTQ 532
Query: 360 KRHFELEKHSAPSMVHSSLTPF 381
++ L P V ++ PF
Sbjct: 533 RK---LRNFFGPEFVKMTIEPF 551
>gi|18375648 protein tyrosine phosphatase, non-receptor type 13
isoform 3 [Homo sapiens]
Length = 2294
Score = 35.0 bits (79), Expect = 0.14
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 47/262 (17%)
Query: 142 SNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQSSLSDVSEVSSVEHTQE 201
S TA Y + + + + +S + + S I++ PQ ++ + HT+E
Sbjct: 315 SGETATYRRCHPEAVTVRTSTTPRKKEARYSDGSIALDIFGPQ-------KMDPIYHTRE 367
Query: 202 -------SSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASIYQNYMGNSFSG 254
SS R + K Q+++ E M +E R Y+ Y G+ FS
Sbjct: 368 LPTSSAISSALDRIRERQKKLQVLR-EAMNVEEPVRR------------YKTYHGDVFST 414
Query: 255 YSHSPPLL-------QVNRSSSNSPRTSETDDGVVGKSSD-GEDEQQVPKGPIHSPVELK 306
S SP ++ QV RS ++ + E+ G+ G + + Q P +P E
Sbjct: 415 SSESPSIISSESDFRQVRRSEAS--KRFESSSGLPGVDETLSQGQSQRPSRQYETPFEGN 472
Query: 307 HVHATV-VKVPEVNSSALPHKLRIKAKAMQ------IKVEAFDNEFEATQKLSSPIDMTS 359
++ + +K E L K+ ++ + IK D + ++++ MT
Sbjct: 473 LINQEIMLKRQEEELMQLQAKMALRQSRLSLYPGDTIKASMLDITRDPLREIALETAMTQ 532
Query: 360 KRHFELEKHSAPSMVHSSLTPF 381
++ L P V ++ PF
Sbjct: 533 RK---LRNFFGPEFVKMTIEPF 551
>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
isoform 1 [Homo sapiens]
Length = 2485
Score = 35.0 bits (79), Expect = 0.14
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 47/262 (17%)
Query: 142 SNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQSSLSDVSEVSSVEHTQE 201
S TA Y + + + + +S + + S I++ PQ ++ + HT+E
Sbjct: 315 SGETATYRRCHPEAVTVRTSTTPRKKEARYSDGSIALDIFGPQ-------KMDPIYHTRE 367
Query: 202 -------SSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASIYQNYMGNSFSG 254
SS R + K Q+++ E M +E R Y+ Y G+ FS
Sbjct: 368 LPTSSAISSALDRIRERQKKLQVLR-EAMNVEEPVRR------------YKTYHGDVFST 414
Query: 255 YSHSPPLL-------QVNRSSSNSPRTSETDDGVVGKSSD-GEDEQQVPKGPIHSPVELK 306
S SP ++ QV RS ++ + E+ G+ G + + Q P +P E
Sbjct: 415 SSESPSIISSESDFRQVRRSEAS--KRFESSSGLPGVDETLSQGQSQRPSRQYETPFEGN 472
Query: 307 HVHATV-VKVPEVNSSALPHKLRIKAKAMQ------IKVEAFDNEFEATQKLSSPIDMTS 359
++ + +K E L K+ ++ + IK D + ++++ MT
Sbjct: 473 LINQEIMLKRQEEELMQLQAKMALRQSRLSLYPGDTIKASMLDITRDPLREIALETAMTQ 532
Query: 360 KRHFELEKHSAPSMVHSSLTPF 381
++ L P V ++ PF
Sbjct: 533 RK---LRNFFGPEFVKMTIEPF 551
>gi|5453992 protein tyrosine phosphatase, non-receptor type 13
isoform 2 [Homo sapiens]
Length = 2466
Score = 35.0 bits (79), Expect = 0.14
Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 47/262 (17%)
Query: 142 SNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQSSLSDVSEVSSVEHTQE 201
S TA Y + + + + +S + + S I++ PQ ++ + HT+E
Sbjct: 315 SGETATYRRCHPEAVTVRTSTTPRKKEARYSDGSIALDIFGPQ-------KMDPIYHTRE 367
Query: 202 -------SSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASIYQNYMGNSFSG 254
SS R + K Q+++ E M +E R Y+ Y G+ FS
Sbjct: 368 LPTSSAISSALDRIRERQKKLQVLR-EAMNVEEPVRR------------YKTYHGDVFST 414
Query: 255 YSHSPPLL-------QVNRSSSNSPRTSETDDGVVGKSSD-GEDEQQVPKGPIHSPVELK 306
S SP ++ QV RS ++ + E+ G+ G + + Q P +P E
Sbjct: 415 SSESPSIISSESDFRQVRRSEAS--KRFESSSGLPGVDETLSQGQSQRPSRQYETPFEGN 472
Query: 307 HVHATV-VKVPEVNSSALPHKLRIKAKAMQ------IKVEAFDNEFEATQKLSSPIDMTS 359
++ + +K E L K+ ++ + IK D + ++++ MT
Sbjct: 473 LINQEIMLKRQEEELMQLQAKMALRQSRLSLYPGDTIKASMLDITRDPLREIALETAMTQ 532
Query: 360 KRHFELEKHSAPSMVHSSLTPF 381
++ L P V ++ PF
Sbjct: 533 RK---LRNFFGPEFVKMTIEPF 551
>gi|169646281 coiled-coil domain containing 14 [Homo sapiens]
Length = 912
Score = 34.7 bits (78), Expect = 0.19
Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 32/238 (13%)
Query: 2 QLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEG----SVGKNKS 57
QLR+ Q +K ++D + + + LN +L E+S +ELL S+ V +N+
Sbjct: 463 QLREQQKTQKPSGAVDCNLELFSLQSLNMSLQNQLEESLKSQELLQSKNEELLKVIENQK 522
Query: 58 SACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKA 117
++ D KD E +++ + + +R K L + ++ K E A +
Sbjct: 523 DENKKFSSIFKD--KDQTILENKQQYD--IEITRIKIELEEALVNVKSSQFKLETAEKEN 578
Query: 118 ELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKS-------------NVSSFVD 164
++L + L+ T + + L S A D + N+
Sbjct: 579 QILGITLRQRDAEVTRLRELTRTLQTSMAKLLSDLSVDSARCKPGNNLTKSLLNIHDKQL 638
Query: 165 EHEPSMVSSSCISVIK---------HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPEN 213
+H+P+ +S +S + HS S E + T E+ + S R P+N
Sbjct: 639 QHDPAPAHTSIMSYLNKLETNYSFTHSEPLSTIKNEETIEPDKTYENVL--SSRGPQN 694
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 34.7 bits (78), Expect = 0.19
Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 32/248 (12%)
Query: 68 PDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLKLKFG 127
P +KK WE N +++ + L V EN + ++ K E +S+ +
Sbjct: 2846 PWDKKVFRTWESSGATNNKSQKEKLSHVLVHDVRENHIGHPESKSVDQKNEFMSVTERER 2905
Query: 128 LISSTAYAQEIQKL---SNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIKHSPQ 184
+ + EI+++ S S V +++Y + + + + +PS S S S + H P
Sbjct: 2906 KLLTNGSLSEIKEMTVKSPSKKVLYREYVVKEGDHPGGLLD-QPSRRSES--SAVSHIPV 2962
Query: 185 SSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREP----RDDRGSYT 240
+ +SS + + + S Q + Q M E+ + D++ +Y+
Sbjct: 2963 RVADERRMLSS--NIPDGFCEQSAFPKHELSQKLSQSSMSKETVETQHFNSIEDEKVTYS 3020
Query: 241 ----ASIYQNYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPK 296
S +Q+Y+G PPL + S + SP + E G SSD D
Sbjct: 3021 EISKVSKHQSYVGLC-------PPLEETETSPTKSPDSLEFSPGKESPSSDVFD------ 3067
Query: 297 GPIHSPVE 304
HSP++
Sbjct: 3068 ---HSPID 3072
>gi|14195601 protein phosphatase 1, regulatory (inhibitor) subunit
12B isoform b [Homo sapiens]
Length = 998
Score = 34.7 bits (78), Expect = 0.19
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 16 LDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSACRRKREFIPDEKKDAM 75
++ SN D + SALTE + T +E L + ++K+E D + +
Sbjct: 874 VEEDSNRDYKKLYESALTENQKLKTKLQEAQLELADIKSKLEKVAQQKQEKTSD-RSSVL 932
Query: 76 YWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLKLKFGLISSTAYA 135
EKR + K S + + +L ++ L + N L+AE +L +S + +
Sbjct: 933 EMEKRERRALERKMSEMEEEMKNLHQLKQIQTLKQMNEQLQAENRALTRVVARLSESIES 992
Query: 136 QEIQKL 141
+ Q+L
Sbjct: 993 SDTQEL 998
>gi|14195599 protein phosphatase 1, regulatory (inhibitor) subunit
12B isoform d [Homo sapiens]
Length = 224
Score = 34.7 bits (78), Expect = 0.19
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 16 LDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSACRRKREFIPDEKKDAM 75
++ SN D + SALTE + T +E L + ++K+E D + +
Sbjct: 100 VEEDSNRDYKKLYESALTENQKLKTKLQEAQLELADIKSKLEKVAQQKQEKTSD-RSSVL 158
Query: 76 YWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLKLKFGLISSTAYA 135
EKR + K S + + +L ++ L + N L+AE +L +S + +
Sbjct: 159 EMEKRERRALERKMSEMEEEMKNLHQLKQIQTLKQMNEQLQAENRALTRVVARLSESIES 218
Query: 136 QEIQKL 141
+ Q+L
Sbjct: 219 SDTQEL 224
>gi|219555661 intraflagellar transport 81-like isoform 1 [Homo
sapiens]
Length = 676
Score = 34.3 bits (77), Expect = 0.24
Identities = 50/255 (19%), Positives = 99/255 (38%), Gaps = 13/255 (5%)
Query: 2 QLRKMQTVKKEQAS--LDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSA 59
+L +Q V E A D K+ +N+ + ++ E E + + S+ + ++S
Sbjct: 291 ELHFLQKVVSEPAMGHSDLLELESKINEINTEINQLIEKKMMRNEPIEGKLSLYRQQASI 350
Query: 60 CRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLE--------NKLIALGEE 111
RK+E +E ++A + + KR++ + VL+ NKL +
Sbjct: 351 ISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTV 410
Query: 112 NATLKAELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMV 171
+ LK +FGL+ T +E+ K + K +S + E
Sbjct: 411 FKKKHQIIAELKAEFGLLQRT---EELLKQRHENIQQQLQTMEEKKGISGYSYTQEELER 467
Query: 172 SSSCISVIKHSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTRE 231
S+ S + +L D+SE+ ++ S + + S + + ++Q+ EL E
Sbjct: 468 VSALKSEVDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDE 527
Query: 232 PRDDRGSYTASIYQN 246
+ S A + N
Sbjct: 528 KKSQYDSCAAGLESN 542
>gi|32526901 intraflagellar transport 81-like isoform 1 [Homo
sapiens]
Length = 676
Score = 34.3 bits (77), Expect = 0.24
Identities = 50/255 (19%), Positives = 99/255 (38%), Gaps = 13/255 (5%)
Query: 2 QLRKMQTVKKEQAS--LDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSA 59
+L +Q V E A D K+ +N+ + ++ E E + + S+ + ++S
Sbjct: 291 ELHFLQKVVSEPAMGHSDLLELESKINEINTEINQLIEKKMMRNEPIEGKLSLYRQQASI 350
Query: 60 CRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLE--------NKLIALGEE 111
RK+E +E ++A + + KR++ + VL+ NKL +
Sbjct: 351 ISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTV 410
Query: 112 NATLKAELLSLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMV 171
+ LK +FGL+ T +E+ K + K +S + E
Sbjct: 411 FKKKHQIIAELKAEFGLLQRT---EELLKQRHENIQQQLQTMEEKKGISGYSYTQEELER 467
Query: 172 SSSCISVIKHSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTRE 231
S+ S + +L D+SE+ ++ S + + S + + ++Q+ EL E
Sbjct: 468 VSALKSEVDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDE 527
Query: 232 PRDDRGSYTASIYQN 246
+ S A + N
Sbjct: 528 KKSQYDSCAAGLESN 542
>gi|194239643 activating transcription factor 7 isoform 3 [Homo
sapiens]
Length = 462
Score = 34.3 bits (77), Expect = 0.24
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 57 SSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLK 116
S+ RR+R DE D +N AA R R+KR+L LE K L +N L
Sbjct: 297 STGGRRRRTV--DEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLS 354
Query: 117 AELLSLKLKFGLISSTAYAQE---IQKLSNSTAVYFQDYQTSKSNVSS--FVDEHEPSMV 171
E+ L+ + + A + + L T Y + + S S V +H +
Sbjct: 355 NEVTLLRNEVAQLKQLLLAHKDCPVTALQKKTQGYLESPKESSEPTGSPAPVIQHSSATA 414
Query: 172 SSSCISVIKHSPQSSLSDVSEVSS 195
S+ +SV + + S +++++S
Sbjct: 415 PSNGLSVRSAAEAVATSVLTQMAS 438
>gi|5802980 activating transcription factor 7 isoform 2 [Homo
sapiens]
Length = 483
Score = 34.3 bits (77), Expect = 0.24
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 57 SSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLK 116
S+ RR+R DE D +N AA R R+KR+L LE K L +N L
Sbjct: 318 STGGRRRRTV--DEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLS 375
Query: 117 AELLSLKLKFGLISSTAYAQE---IQKLSNSTAVYFQDYQTSKSNVSS--FVDEHEPSMV 171
E+ L+ + + A + + L T Y + + S S V +H +
Sbjct: 376 NEVTLLRNEVAQLKQLLLAHKDCPVTALQKKTQGYLESPKESSEPTGSPAPVIQHSSATA 435
Query: 172 SSSCISVIKHSPQSSLSDVSEVSS 195
S+ +SV + + S +++++S
Sbjct: 436 PSNGLSVRSAAEAVATSVLTQMAS 459
>gi|194239640 activating transcription factor 7 isoform 1 [Homo
sapiens]
Length = 494
Score = 34.3 bits (77), Expect = 0.24
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 57 SSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLK 116
S+ RR+R DE D +N AA R R+KR+L LE K L +N L
Sbjct: 329 STGGRRRRTV--DEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLS 386
Query: 117 AELLSLKLKFGLISSTAYAQE---IQKLSNSTAVYFQDYQTSKSNVSS--FVDEHEPSMV 171
E+ L+ + + A + + L T Y + + S S V +H +
Sbjct: 387 NEVTLLRNEVAQLKQLLLAHKDCPVTALQKKTQGYLESPKESSEPTGSPAPVIQHSSATA 446
Query: 172 SSSCISVIKHSPQSSLSDVSEVSS 195
S+ +SV + + S +++++S
Sbjct: 447 PSNGLSVRSAAEAVATSVLTQMAS 470
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 34.3 bits (77), Expect = 0.24
Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 6/233 (2%)
Query: 2 QLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVG-KNKSSAC 60
Q ++ Q +K+ + L + V + + ++ + STT ++ L + + K
Sbjct: 387 QQKEQQVMKESKEKLTKTKTVQQKVKTSTKTHSAKKVSTTAKQALRKQQTKAWKKLQQQK 446
Query: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
++R+ D++K A E+RRK E ++ R+ + + G+ + K+
Sbjct: 447 EQERQKEEDQRKQAEE-EERRKREEEIRKIRDLSNQEEQYNRFMKLVGGKRRSRSKSSDP 505
Query: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK 180
L+ T I + N V + S S V +P S +
Sbjct: 506 DLRRSLDK-QPTDSGGGIYQYDNYEEVAMDTDSETSSPAPSPV---QPPFFSECSLGYFS 561
Query: 181 HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPR 233
+P SL +VSS+ + V+G C S E + P+ E + P+
Sbjct: 562 PAPSLSLPPPPQVSSLPPLSQPYVEGLCVSLEPLPPLPPLPPLPPEDPEQPPK 614
>gi|4758054 cAMP responsive element binding protein 1 isoform A
[Homo sapiens]
Length = 327
Score = 33.9 bits (76), Expect = 0.32
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 KNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 123
KN EAA+ R K++ LEN++ L +N TL EL +LK
Sbjct: 278 KNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALK 319
>gi|19745184 cAMP responsive element binding protein 1 isoform B
[Homo sapiens]
Length = 341
Score = 33.9 bits (76), Expect = 0.32
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 KNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 123
KN EAA+ R K++ LEN++ L +N TL EL +LK
Sbjct: 292 KNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALK 333
>gi|4885073 activating transcription factor 1 [Homo sapiens]
Length = 271
Score = 33.9 bits (76), Expect = 0.32
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 KNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 123
KN EAA+ R K++ LEN++ L +N TL EL +LK
Sbjct: 222 KNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLK 263
>gi|194353992 amyloid beta A4 precursor protein-binding, family A,
member 2 isoform b [Homo sapiens]
Length = 737
Score = 33.9 bits (76), Expect = 0.32
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 194 SSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASI--YQNYMGNS 251
S+ H +GS P+ + I + EP LE++ +E + G Y AS YQ+Y
Sbjct: 144 SAGPHPHGHEAEGSQDYPDGQLPIPEDEPSVLEAHDQE---EDGHYCASKEGYQDYYPEE 200
Query: 252 FSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGK--------SSDGEDEQQVPKGPIHSPV 303
+G + + P ++ R + E D +V + S E GP P
Sbjct: 201 ANGNTGASP-YRLRRGDGDLEDQEEDIDQIVAEIKMSLSMTSITSASEASPEHGPEPGPE 259
Query: 304 ELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEA 340
+ +V P + +S P + + K++ + EA
Sbjct: 260 D------SVEACPPIKASCSPSRHEARPKSLNLLPEA 290
>gi|22035550 amyloid beta A4 precursor protein-binding, family A,
member 2 isoform a [Homo sapiens]
Length = 749
Score = 33.9 bits (76), Expect = 0.32
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 194 SSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYTASI--YQNYMGNS 251
S+ H +GS P+ + I + EP LE++ +E + G Y AS YQ+Y
Sbjct: 144 SAGPHPHGHEAEGSQDYPDGQLPIPEDEPSVLEAHDQE---EDGHYCASKEGYQDYYPEE 200
Query: 252 FSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGK--------SSDGEDEQQVPKGPIHSPV 303
+G + + P ++ R + E D +V + S E GP P
Sbjct: 201 ANGNTGASP-YRLRRGDGDLEDQEEDIDQIVAEIKMSLSMTSITSASEASPEHGPEPGPE 259
Query: 304 ELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEA 340
+ +V P + +S P + + K++ + EA
Sbjct: 260 D------SVEACPPIKASCSPSRHEARPKSLNLLPEA 290
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.122 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,792,653
Number of Sequences: 37866
Number of extensions: 686472
Number of successful extensions: 2912
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 2806
Number of HSP's gapped (non-prelim): 229
length of query: 462
length of database: 18,247,518
effective HSP length: 106
effective length of query: 356
effective length of database: 14,233,722
effective search space: 5067205032
effective search space used: 5067205032
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.