Guide to the Human Genome
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Name: TEF Sequence: fasta or formatted (303aa) NCBI GI: 4507431
Description:

thyrotrophic embryonic factor isoform 1

Referenced in:

Pituitary

Other entries for this name:
alt prot [273aa] thyrotrophic embryonic factor isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         27           4
 C cysteine            0.7          2           1
 D aspartate           5.3         16           1
 E glutamate          10.9         33           2
 F phenylalanine       3.0          9           1
 G glycine             5.9         18           3
 H histidine           1.3          4           1
 I isoleucine          3.0          9           1
 K lysine              9.9         30           2
 L leucine             8.6         26           3
 M methionine          2.0          6           1
 N asparagine          3.6         11           2
 P proline             9.6         29           2
 Q glutamine           1.7          5           1
 R arginine            5.0         15           2
 S serine              8.6         26           3
 T threonine           4.6         14           1
 V valine              5.3         16           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thyrotrophic embryonic factor isoform 1 
TEF                   0.833   thyrotrophic embryonic factor isoform 2 
HLF                   0.466   hepatic leukemia factor 
DBP                   0.337   D site of albumin promoter (albumin D-box) binding p...
NFIL3                 0.067   nuclear factor, interleukin 3 regulated 
LOC100291212          0.065   PREDICTED: hypothetical protein XP_002347943 
BATF                  0.038   basic leucine zipper transcription factor, ATF-like [...
BATF3                 0.033   basic leucine zipper transcription factor, ATF-like 3...
CEBPB                 0.031   CCAAT/enhancer binding protein beta 
FOS                   0.031   v-fos FBJ murine osteosarcoma viral oncogene homolog ...
FOSL2                 0.029   FOS-like antigen 2 
FOSB                  0.027   FBJ murine osteosarcoma viral oncogene homolog B is...
CEBPG                 0.026   CCAAT/enhancer binding protein gamma 
ATF4                  0.024   activating transcription factor 4 
ATF4                  0.024   activating transcription factor 4 
ATF7                  0.024   activating transcription factor 7 isoform 3 
ATF7                  0.024   activating transcription factor 7 isoform 2 
ATF7                  0.024   activating transcription factor 7 isoform 1 
CEBPA                 0.022   CCAAT/enhancer binding protein alpha 
JDP2                  0.022   Jun dimerization protein 2 isoform b 
JDP2                  0.022   Jun dimerization protein 2 isoform a 
JDP2                  0.022   Jun dimerization protein 2 isoform a 
JDP2                  0.022   Jun dimerization protein 2 isoform a 
CREB5                 0.022   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.022   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.022   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.022   cAMP responsive element binding protein 5 isoform al...
CEBPD                 0.022   CCAAT/enhancer binding protein delta 
BATF2                 0.022   basic leucine zipper transcription factor, ATF-like ...
ATF2                  0.021   activating transcription factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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