Guide to the Human Genome
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Name: FAM178A Sequence: fasta or formatted (1173aa) NCBI GI: 150456436
Description:

hypothetical protein LOC55719 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {1186aa} hypothetical protein LOC55719 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         52           3
 C cysteine            1.4         16           1
 D aspartate           5.3         62           2
 E glutamate           7.6         89           4
 F phenylalanine       3.2         37           2
 G glycine             5.1         60           2
 H histidine           3.4         40           2
 I isoleucine          4.9         58           2
 K lysine              9.3        109           3
 L leucine             9.9        116           2
 M methionine          1.7         20           2
 N asparagine          4.3         50           2
 P proline             6.2         73           2
 Q glutamine           4.2         49           1
 R arginine            5.6         66           2
 S serine             12.3        144           3
 T threonine           4.7         55           2
 V valine              4.0         47           2
 W tryptophan          0.8          9           1
 Y tyrosine            1.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55719 isoform 1 
FAM178A               0.989   hypothetical protein LOC55719 isoform 2 
FAM178B               0.082   hypothetical protein LOC51252 isoform A 
FAM178B               0.016   hypothetical protein LOC51252 isoform B 
DSPP                  0.013   dentin sialophosphoprotein preproprotein 
SFRS4                 0.013   splicing factor, arginine/serine-rich 4 
C2orf16               0.012   hypothetical protein LOC84226 
NOLC1                 0.012   nucleolar and coiled-body phosphoprotein 1 
CYLC1                 0.012   cylicin, basic protein of sperm head cytoskeleton 1...
MLLT3                 0.011   myeloid/lymphoid or mixed-lineage leukemia (trithor...
CRKRS                 0.011   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.011   Cdc2-related kinase, arginine/serine-rich isoform 1...
TNIK                  0.011   TRAF2 and NCK interacting kinase isoform 8 
PRPF38B               0.011   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SFRS18                0.011   splicing factor, arginine/serine-rich 130 
SFRS18                0.011   splicing factor, arginine/serine-rich 130 
BRWD1                 0.010   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.010   bromodomain and WD repeat domain containing 1 isofor...
THOC2                 0.010   THO complex 2 
TNIK                  0.010   TRAF2 and NCK interacting kinase isoform 7 
ATAD5                 0.009   ATPase family, AAA domain containing 5 
BOD1L                 0.009   biorientation of chromosomes in cell division 1-like...
NEFH                  0.009   neurofilament, heavy polypeptide 200kDa 
MUC21                 0.009   mucin 21 
IWS1                  0.009   IWS1 homolog 
SFRS12                0.009   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.009   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100170229          0.009   hypothetical protein LOC100170229 
ANKRD12               0.009   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.009   ankyrin repeat domain 12 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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