Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PTPN13 Sequence: fasta or formatted (2485aa) NCBI GI: 18375646
Description:

protein tyrosine phosphatase, non-receptor type 13 isoform 1

Referenced in:

Cytoskeleton
PDZ Domain
Protein Tyrosine Phosphatases
Rho and Rac

Other entries for this name:
alt prot [2294aa] protein tyrosine phosphatase, non-receptor type 13 isoform 3
alt prot [2490aa] protein tyrosine phosphatase, non-receptor type 13 isoform 4
alt prot [2466aa] protein tyrosine phosphatase, non-receptor type 13 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7        117           2
 C cysteine            1.5         37           1
 D aspartate           5.9        146           3
 E glutamate           7.2        178           3
 F phenylalanine       2.9         71           2
 G glycine             5.8        144           2
 H histidine           2.7         66           2
 I isoleucine          5.1        127           2
 K lysine              6.7        166           3
 L leucine             9.8        244           4
 M methionine          2.1         52           2
 N asparagine          4.2        104           2
 P proline             5.4        133           3
 Q glutamine           5.3        132           2
 R arginine            4.8        119           2
 S serine             11.0        274           4
 T threonine           5.6        140           2
 V valine              6.2        154           2
 W tryptophan          0.7         17           1
 Y tyrosine            2.6         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, non-receptor type 13 i... 
PTPN13                0.999   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.990   protein tyrosine phosphatase, non-receptor type 13 is...
PTPN13                0.569   protein tyrosine phosphatase, non-receptor type 13 i...
FRMPD2                0.055   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.055   FERM and PDZ domain containing 2 isoform 3 
PTPN20A               0.044   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.044   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.044   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.044   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.044   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.044   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.038   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.038   protein tyrosine phosphatase, non-receptor type 20A...
PTPRH                 0.034   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.034   protein tyrosine phosphatase, receptor type, H isof...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN11                0.033   protein tyrosine phosphatase, non-receptor type 11 [...
PTPN4                 0.033   protein tyrosine phosphatase, non-receptor type 4 [Ho...
PTPRF                 0.032   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.032   protein tyrosine phosphatase, receptor type, F isof...
PTPRK                 0.032   protein tyrosine phosphatase, receptor type, K isof...
PTPN6                 0.032   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.032   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.032   protein tyrosine phosphatase, non-receptor type 6 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press