Guide to the Human Genome
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Name: IFT81 Sequence: fasta or formatted (676aa) NCBI GI: 219555661
Description:

intraflagellar transport 81-like isoform 1

Referenced in:

Additional Structural Proteins

Other entries for this name:
alt mRNA [676aa] intraflagellar transport 81-like isoform 1
alt prot [431aa] intraflagellar transport 81-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         36           3
 C cysteine            0.9          6           1
 D aspartate           3.6         24           2
 E glutamate          13.2         89           3
 F phenylalanine       2.5         17           1
 G glycine             2.8         19           2
 H histidine           1.6         11           1
 I isoleucine          5.0         34           2
 K lysine             11.8         80           3
 L leucine            11.4         77           2
 M methionine          3.6         24           2
 N asparagine          3.6         24           1
 P proline             1.9         13           1
 Q glutamine           8.7         59           3
 R arginine            6.5         44           2
 S serine              6.4         43           2
 T threonine           3.7         25           1
 V valine              4.3         29           2
 W tryptophan          0.4          3           1
 Y tyrosine            2.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intraflagellar transport 81-like isoform 1 
IFT81                 1.000   intraflagellar transport 81-like isoform 1 
IFT81                 0.576   intraflagellar transport 81-like isoform 2 
CCDC18                0.061   sarcoma antigen NY-SAR-41 
LOC283685             0.051   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CENPE                 0.051   centromere protein E 
NUMA1                 0.050   nuclear mitotic apparatus protein 1 
C14orf145             0.050   hypothetical protein LOC145508 
CCDC88A               0.049   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.049   coiled-coil domain containing 88A isoform 1 
LOC283685             0.048   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TCHH                  0.048   trichohyalin 
MYH13                 0.048   myosin, heavy polypeptide 13, skeletal muscle [Homo...
PMFBP1                0.045   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.045   polyamine modulated factor 1 binding protein 1 isof...
EEA1                  0.045   early endosome antigen 1, 162kD 
CEP290                0.044   centrosomal protein 290kDa 
ERC2                  0.044   cytomatrix protein p110 
DSP                   0.044   desmoplakin isoform I 
MYH2                  0.044   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.044   myosin, heavy chain 2, skeletal muscle, adult [Homo...
LOC727832             0.044   golgi autoantigen, golgin subfamily a-like 
ROCK2                 0.044   Rho-associated, coiled-coil containing protein kinas...
TPR                   0.044   nuclear pore complex-associated protein TPR 
WDR87                 0.043   NYD-SP11 protein 
MYH9                  0.043   myosin, heavy polypeptide 9, non-muscle 
ERC1                  0.043   RAB6-interacting protein 2 isoform epsilon 
LOC440243             0.043   PREDICTED: Putative golgin subfamily A member 6-lik...
CLIP1                 0.042   restin isoform b 
CLIP1                 0.042   restin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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