Guide to the Human Genome
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Name: PPP1R12B Sequence: fasta or formatted (224aa) NCBI GI: 14195599
Description:

protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform d

Referenced in:

Myosin
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [208aa] protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform c
alt prot [998aa] protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform b
alt prot [982aa] protein phosphatase 1, regulatory (inhibitor) subunit 12B isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         15           1
 C cysteine            0.0          0           0
 D aspartate           5.8         13           1
 E glutamate          16.1         36           3
 F phenylalanine       0.4          1           1
 G glycine             2.7          6           2
 H histidine           0.9          2           1
 I isoleucine          2.2          5           1
 K lysine              8.9         20           2
 L leucine             9.8         22           1
 M methionine          2.7          6           1
 N asparagine          4.0          9           1
 P proline             0.9          2           1
 Q glutamine           6.2         14           2
 R arginine           11.6         26           3
 S serine              9.8         22           2
 T threonine           6.2         14           2
 V valine              2.7          6           2
 W tryptophan          0.9          2           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, regulatory (inhibitor) subuni... 
PPP1R12B              1.000   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.840   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.840   protein phosphatase 1, regulatory (inhibitor) subunit...
PPP1R12A              0.345   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.345   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.345   protein phosphatase 1, regulatory (inhibitor) subunit...
PPP1R12C              0.150   protein phosphatase 1, regulatory subunit 12C 
NEXN                  0.076   nexilin (F actin binding protein) 
TPM3                  0.074   tropomyosin 3 isoform 1 
CGNL1                 0.069   cingulin-like 1 
CALD1                 0.067   caldesmon 1 isoform 5 
CALD1                 0.067   caldesmon 1 isoform 2 
RBM25                 0.067   RNA binding motif protein 25 
CALD1                 0.067   caldesmon 1 isoform 1 
GCC1                  0.067   Golgi coiled-coil protein 1 
WDR87                 0.064   NYD-SP11 protein 
GIGYF2                0.064   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.064   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.064   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.064   GRB10 interacting GYF protein 2 isoform b 
CALD1                 0.064   caldesmon 1 isoform 4 
CALD1                 0.064   caldesmon 1 isoform 3 
MYH15                 0.062   myosin, heavy polypeptide 15 
LOC283767             0.062   golgi autoantigen, golgin subfamily a-like 
INCENP                0.062   inner centromere protein antigens 135/155kDa isofor...
CCDC64B               0.062   coiled-coil domain containing 64B 
LOC400352             0.059   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.059   PREDICTED: similar to Putative golgin subfamily A m...
LOC645202             0.059   PREDICTED: hypothetical protein LOC645202 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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