Guide to the Human Genome
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Name: APBA2 Sequence: fasta or formatted (737aa) NCBI GI: 194353992
Description:

amyloid beta A4 precursor protein-binding, family A, member 2 isoform b

Referenced in:

Additional Brain Proteins
PDZ Domain

Other entries for this name:
alt prot [749aa] amyloid beta A4 precursor protein-binding, family A, member 2 iso...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         48           2
 C cysteine            2.0         15           1
 D aspartate           5.8         43           2
 E glutamate          10.7         79           4
 F phenylalanine       1.5         11           1
 G glycine             7.7         57           2
 H histidine           3.1         23           1
 I isoleucine          6.2         46           2
 K lysine              4.1         30           2
 L leucine             7.2         53           2
 M methionine          2.8         21           2
 N asparagine          4.3         32           3
 P proline             7.3         54           2
 Q glutamine           5.3         39           2
 R arginine            4.3         32           3
 S serine              8.0         59           3
 T threonine           4.1         30           2
 V valine              5.4         40           4
 W tryptophan          0.4          3           1
 Y tyrosine            3.0         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid beta A4 precursor protein-binding, family A... 
APBA2                 0.994   amyloid beta A4 precursor protein-binding, family A,...
APBA1                 0.460   amyloid beta A4 precursor protein-binding, family A,...
APBA3                 0.314   amyloid beta (A4) precursor protein-binding, family ...
SDCBP                 0.024   syntenin isoform 3 
SDCBP                 0.024   syntenin isoform 3 
SDCBP                 0.024   syntenin isoform 2 
SDCBP                 0.024   syntenin isoform 1 
SDCBP                 0.024   syntenin isoform 1 
SDCBP2                0.022   syndecan binding protein 2 isoform a 
SDCBP2                0.022   syndecan binding protein 2 isoform b 
INADL                 0.020   InaD-like 
MPDZ                  0.020   multiple PDZ domain protein 
DLG4                  0.019   post-synaptic density protein 95 isoform 1 
DLG4                  0.019   post-synaptic density protein 95 isoform 2 
GRIP1                 0.018   glutamate receptor interacting protein 1 
DLG3                  0.018   synapse-associated protein 102 isoform a 
DLG1                  0.017   discs, large homolog 1 isoform 1 
DLG1                  0.017   discs, large homolog 1 isoform 2 
RP1L1                 0.017   retinitis pigmentosa 1-like 1 
DLG2                  0.017   chapsyn-110 isoform 3 
DLG2                  0.017   chapsyn-110 isoform 1 
DLG2                  0.017   chapsyn-110 isoform 2 
MPP5                  0.016   membrane protein, palmitoylated 5 
LOC100132713          0.015   PREDICTED: similar to hCG1654128 
SHC4                  0.014   rai-like protein 
NOS1                  0.014   nitric oxide synthase 1, neuronal 
LOC100132713          0.014   PREDICTED: similar to hCG1654128 
GRIP2                 0.014   glutamate receptor interacting protein 2 
SCRIB                 0.014   scribble isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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