Guide to the Human Genome
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Name: ATF1 Sequence: fasta or formatted (271aa) NCBI GI: 4885073
Description:

activating transcription factor 1

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         18           2
 C cysteine            0.7          2           1
 D aspartate           4.4         12           2
 E glutamate           5.5         15           2
 F phenylalanine       0.0          0           0
 G glycine             6.3         17           1
 H histidine           1.5          4           1
 I isoleucine          4.8         13           1
 K lysine              5.9         16           3
 L leucine             7.4         20           1
 M methionine          2.2          6           1
 N asparagine          3.3          9           1
 P proline             4.4         12           1
 Q glutamine           9.2         25           2
 R arginine            4.8         13           2
 S serine             13.3         36           2
 T threonine          10.7         29           2
 V valine              6.3         17           3
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 1 
CREB1                 0.578   cAMP responsive element binding protein 1 isoform A [...
CREB1                 0.574   cAMP responsive element binding protein 1 isoform B ...
CREM                  0.476   cAMP responsive element modulator isoform u 
CREM                  0.450   cAMP responsive element modulator isoform a 
CREM                  0.450   cAMP responsive element modulator isoform o 
CREM                  0.446   cAMP responsive element modulator isoform m 
CREM                  0.283   cAMP responsive element modulator isoform s 
CREM                  0.263   cAMP responsive element modulator isoform t 
CREM                  0.239   cAMP responsive element modulator isoform v 
CREM                  0.239   cAMP responsive element modulator isoform p 
CREM                  0.235   cAMP responsive element modulator isoform n 
CREM                  0.211   cAMP responsive element modulator isoform d 
CREM                  0.209   cAMP responsive element modulator isoform h 
CREM                  0.207   cAMP responsive element modulator isoform j 
CREM                  0.207   cAMP responsive element modulator isoform g 
CREM                  0.195   cAMP responsive element modulator isoform i 
CREM                  0.195   cAMP responsive element modulator isoform r 
CREM                  0.185   cAMP responsive element modulator isoform f 
CREM                  0.183   cAMP responsive element modulator isoform k 
CREM                  0.181   cAMP responsive element modulator isoform e 
CREM                  0.169   cAMP responsive element modulator isoform l 
CREM                  0.169   cAMP responsive element modulator isoform q 
CREM                  0.084   cAMP responsive element modulator isoform b 
CREB3L1               0.076   cAMP responsive element binding protein 3-like 1 [Ho...
ATF6                  0.066   activating transcription factor 6 
CREB3L2               0.054   cAMP responsive element binding protein 3-like 2 [Ho...
ATF6B                 0.050   activating transcription factor 6 beta isoform b [H...
ATF6B                 0.050   activating transcription factor 6 beta isoform a [Ho...
CREB3L4               0.048   cAMP responsive element binding protein 3-like 4 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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