Guide to the Human Genome
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Name: TEF Sequence: fasta or formatted (273aa) NCBI GI: 223972670
Description:

thyrotrophic embryonic factor isoform 2

Referenced in:

Pituitary

Other entries for this name:
alt prot [303aa] thyrotrophic embryonic factor isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         22           4
 C cysteine            0.7          2           1
 D aspartate           5.5         15           1
 E glutamate          12.1         33           2
 F phenylalanine       2.9          8           1
 G glycine             2.9          8           2
 H histidine           1.8          5           1
 I isoleucine          3.3          9           1
 K lysine             10.3         28           2
 L leucine             9.2         25           3
 M methionine          2.2          6           1
 N asparagine          3.7         10           2
 P proline             8.4         23           2
 Q glutamine           1.5          4           1
 R arginine            4.4         12           2
 S serine              9.2         25           3
 T threonine           5.5         15           1
 V valine              5.5         15           1
 W tryptophan          1.1          3           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thyrotrophic embryonic factor isoform 2 
TEF                   0.931   thyrotrophic embryonic factor isoform 1 
HLF                   0.524   hepatic leukemia factor 
DBP                   0.376   D site of albumin promoter (albumin D-box) binding p...
NFIL3                 0.075   nuclear factor, interleukin 3 regulated 
LOC100291212          0.073   PREDICTED: hypothetical protein XP_002347943 
BATF                  0.042   basic leucine zipper transcription factor, ATF-like [...
BATF3                 0.036   basic leucine zipper transcription factor, ATF-like 3...
CEBPB                 0.035   CCAAT/enhancer binding protein beta 
FOS                   0.035   v-fos FBJ murine osteosarcoma viral oncogene homolog ...
FOSL2                 0.033   FOS-like antigen 2 
FOSB                  0.031   FBJ murine osteosarcoma viral oncogene homolog B is...
CEBPG                 0.029   CCAAT/enhancer binding protein gamma 
ATF4                  0.027   activating transcription factor 4 
ATF4                  0.027   activating transcription factor 4 
ATF7                  0.027   activating transcription factor 7 isoform 3 
ATF7                  0.027   activating transcription factor 7 isoform 2 
ATF7                  0.027   activating transcription factor 7 isoform 1 
CEBPA                 0.025   CCAAT/enhancer binding protein alpha 
JDP2                  0.025   Jun dimerization protein 2 isoform b 
JDP2                  0.025   Jun dimerization protein 2 isoform a 
JDP2                  0.025   Jun dimerization protein 2 isoform a 
JDP2                  0.025   Jun dimerization protein 2 isoform a 
CREB5                 0.025   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.025   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.025   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.025   cAMP responsive element binding protein 5 isoform al...
CEBPD                 0.025   CCAAT/enhancer binding protein delta 
BATF2                 0.025   basic leucine zipper transcription factor, ATF-like ...
ATF2                  0.023   activating transcription factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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