Guide to the Human Genome
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Name: TCF7L2 Sequence: fasta or formatted (579aa) NCBI GI: 226371625
Description:

transcription factor 7-like 2 isoform 5

Referenced in:

SOX Family
T cells

Other entries for this name:
alt prot [596aa] transcription factor 7-like 2 isoform 2
alt prot [489aa] transcription factor 7-like 2 isoform 3
alt prot [455aa] transcription factor 7-like 2 isoform 4
alt prot [442aa] transcription factor 7-like 2 isoform 6
alt prot [602aa] transcription factor 7-like 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         40           2
 C cysteine            1.2          7           1
 D aspartate           4.5         26           2
 E glutamate           5.5         32           3
 F phenylalanine       1.6          9           1
 G glycine             5.9         34           4
 H histidine           4.1         24           2
 I isoleucine          2.8         16           1
 K lysine              6.7         39           4
 L leucine             9.7         56           3
 M methionine          1.9         11           2
 N asparagine          3.3         19           2
 P proline            13.1         76           4
 Q glutamine           5.4         31           2
 R arginine            4.8         28           2
 S serine             11.1         64           3
 T threonine           4.5         26           2
 V valine              3.6         21           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.6         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 7-like 2 isoform 5 
TCF7L2                0.991   transcription factor 7-like 2 isoform 2 
TCF7L2                0.974   transcription factor 7-like 2 isoform 1 
TCF7L2                0.718   transcription factor 7-like 2 isoform 6 
TCF7L2                0.707   transcription factor 7-like 2 isoform 4 
TCF7L2                0.699   transcription factor 7-like 2 isoform 3 
TCF7L1                0.551   HMG-box transcription factor TCF-3 
LEF1                  0.363   lymphoid enhancer-binding factor 1 isoform 1 
LEF1                  0.317   lymphoid enhancer-binding factor 1 isoform 3 
LEF1                  0.317   lymphoid enhancer-binding factor 1 isoform 2 
TCF7                  0.248   transcription factor 7 (T-cell specific, HMG-box) 5...
TCF7                  0.221   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.214   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.178   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.177   transcription factor 7 (T-cell specific, HMG-box) 6...
TCF7                  0.175   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.175   transcription factor 7 (T-cell specific, HMG-box) is...
CIC                   0.044   capicua homolog 
SOX30                 0.042   SRY (sex determining region Y)-box 30 isoform a [Hom...
SOX30                 0.039   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX6                  0.035   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.035   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.035   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.035   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX17                 0.033   SRY-box 17 
SOX13                 0.032   SRY-box 13 
SOX3                  0.032   SRY (sex determining region Y)-box 3 
SOX5                  0.031   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.031   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.031   SRY (sex determining region Y)-box 5 isoform a [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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