Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LYN Sequence: fasta or formatted (491aa) NCBI GI: 162287326
Description:

Yamaguchi sarcoma viral (v-yes-1) oncogene homolog isoform B

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [512aa] Yamaguchi sarcoma viral (v-yes-1) oncogene homolog isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         31           2
 C cysteine            1.6          8           1
 D aspartate           6.7         33           2
 E glutamate           7.7         38           2
 F phenylalanine       4.1         20           2
 G glycine             6.7         33           2
 H histidine           1.4          7           1
 I isoleucine          6.3         31           2
 K lysine              9.2         45           2
 L leucine             8.8         43           2
 M methionine          2.6         13           1
 N asparagine          2.6         13           2
 P proline             5.3         26           1
 Q glutamine           3.9         19           3
 R arginine            4.5         22           2
 S serine              5.7         28           1
 T threonine           4.7         23           1
 V valine              5.3         26           2
 W tryptophan          1.8          9           2
 Y tyrosine            4.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ... 
LYN                   0.987   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
HCK                   0.719   hemopoietic cell kinase isoform p61HCK 
LCK                   0.662   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.662   lymphocyte-specific protein tyrosine kinase precurs...
BLK                   0.618   B lymphoid tyrosine kinase 
YES1                  0.573   viral oncogene yes-1 homolog 1 
FYN                   0.568   protein-tyrosine kinase fyn isoform a 
FYN                   0.556   protein-tyrosine kinase fyn isoform b 
SRC                   0.545   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.545   proto-oncogene tyrosine-protein kinase SRC 
FGR                   0.541   proto-oncogene tyrosine-protein kinase FGR 
FGR                   0.541   proto-oncogene tyrosine-protein kinase FGR 
FGR                   0.541   proto-oncogene tyrosine-protein kinase FGR 
FYN                   0.487   protein-tyrosine kinase fyn isoform c 
FRK                   0.453   fyn-related kinase 
ABL1                  0.331   c-abl oncogene 1, receptor tyrosine kinase isoform a...
SRMS                  0.331   src-related kinase lacking C-terminal regulatory tyr...
ABL1                  0.329   c-abl oncogene 1, receptor tyrosine kinase isoform b...
ABL2                  0.329   arg tyrosine kinase isoform c 
ABL2                  0.329   arg tyrosine kinase isoform b 
ABL2                  0.329   arg tyrosine kinase isoform e 
ABL2                  0.329   arg tyrosine kinase isoform d 
ABL2                  0.329   arg tyrosine kinase isoform a 
PTK6                  0.317   PTK6 protein tyrosine kinase 6 
TXK                   0.312   TXK tyrosine kinase 
BTK                   0.303   Bruton agammaglobulinemia tyrosine kinase 
TEC                   0.296   tec protein tyrosine kinase 
ITK                   0.290   IL2-inducible T-cell kinase 
CSK                   0.271   c-src tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press