Guide to the Human Genome
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Name: RTN4R Sequence: fasta or formatted (473aa) NCBI GI: 13194201
Description:

reticulon 4 receptor precursor

Referenced in:

Leucine-rich Repeat Family
Oligodendrocytes and Myelin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         51           3
 C cysteine            3.4         16           2
 D aspartate           4.4         21           2
 E glutamate           2.7         13           2
 F phenylalanine       2.7         13           1
 G glycine             9.9         47           4
 H histidine           3.4         16           1
 I isoleucine          1.7          8           1
 K lysine              1.7          8           1
 L leucine            15.0         71           3
 M methionine          0.4          2           1
 N asparagine          3.8         18           2
 P proline             9.1         43           2
 Q glutamine           4.0         19           2
 R arginine            8.2         39           3
 S serine              6.8         32           3
 T threonine           4.4         21           2
 V valine              4.2         20           1
 W tryptophan          1.9          9           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reticulon 4 receptor precursor 
RTN4RL1               0.299   reticulon 4 receptor-like 1 
RTN4RL2               0.292   reticulon 4 receptor-like 2 
IGFALS                0.110   insulin-like growth factor binding protein, acid la...
IGFALS                0.110   insulin-like growth factor binding protein, acid labi...
CHADL                 0.109   chondroadherin-like 
NYX                   0.109   nyctalopin precursor 
LRRC4                 0.109   leucine rich repeat containing 4 
LRRC4C                0.108   netrin-G1 ligand 
LRRC4B                0.106   leucine rich repeat containing 4B 
LRRC24                0.105   leucine rich repeat containing 24 
KIAA0644              0.105   hypothetical protein LOC9865 
CPN2                  0.099   carboxypeptidase N, polypeptide 2, 83kD 
LGR4                  0.098   leucine-rich repeat-containing G protein-coupled re...
SLIT1                 0.095   slit homolog 1 
LRRN2                 0.095   leucine rich repeat neuronal 2 
LRRN2                 0.095   leucine rich repeat neuronal 2 
LGR6                  0.094   leucine-rich repeat-containing G protein-coupled rec...
VASN                  0.093   slit-like 2 
LGR6                  0.090   leucine-rich repeat-containing G protein-coupled rec...
LRRC70                0.089   synleurin 
GP5                   0.089   glycoprotein V (platelet) 
CHAD                  0.087   chondroadherin precursor 
LGR5                  0.087   leucine-rich repeat-containing G protein-coupled rece...
LRRC15                0.086   leucine rich repeat containing 15 isoform a 
LRRC15                0.086   leucine rich repeat containing 15 isoform b 
SLITRK2               0.083   SLIT and NTRK-like family, member 2 
SLITRK2               0.083   SLIT and NTRK-like family, member 2 
SLITRK2               0.083   SLIT and NTRK-like family, member 2 
SLITRK2               0.083   SLIT and NTRK-like family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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