Guide to the Human Genome
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Name: SLITRK2 Sequence: fasta or formatted (845aa) NCBI GI: 221136981
Description:

SLIT and NTRK-like family, member 2

Referenced in:

Neurons

Other entries for this name:
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
alt mRNA [845aa] SLIT and NTRK-like family, member 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         35           1
 C cysteine            2.4         20           1
 D aspartate           3.9         33           1
 E glutamate           5.8         49           2
 F phenylalanine       3.7         31           1
 G glycine             5.0         42           2
 H histidine           2.1         18           1
 I isoleucine          4.5         38           2
 K lysine              5.2         44           2
 L leucine            14.2        120           3
 M methionine          1.3         11           1
 N asparagine          7.6         64           3
 P proline             6.7         57           3
 Q glutamine           4.7         40           1
 R arginine            4.9         41           2
 S serine              7.1         60           2
 T threonine           6.3         53           2
 V valine              6.0         51           2
 W tryptophan          0.6          5           1
 Y tyrosine            3.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK2               1.000   SLIT and NTRK-like family, member 2 
SLITRK5               0.459   SLIT and NTRK-like family, member 5 
SLITRK4               0.374   slit and trk like 4 protein 
SLITRK3               0.372   slit and trk like 3 protein 
SLITRK6               0.333   slit and trk like 6 
SLITRK1               0.308   slit and trk like 1 protein 
SLIT1                 0.072   slit homolog 1 
SLIT2                 0.065   slit homolog 2 
SLIT3                 0.063   slit homolog 3 
CHADL                 0.059   chondroadherin-like 
RTN4R                 0.047   reticulon 4 receptor precursor 
LRRC15                0.047   leucine rich repeat containing 15 isoform a 
LRRC15                0.047   leucine rich repeat containing 15 isoform b 
RTN4RL2               0.044   reticulon 4 receptor-like 2 
LRRC70                0.044   synleurin 
FLRT1                 0.042   fibronectin leucine rich transmembrane protein 1 [Ho...
FLRT3                 0.042   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.042   fibronectin leucine rich transmembrane protein 3 prec...
CHAD                  0.042   chondroadherin precursor 
LRTM1                 0.040   leucine-rich repeats and transmembrane domains 1 [Ho...
LRTM2                 0.040   leucine-rich repeats and transmembrane domains 2 [Ho...
RTN4RL1               0.040   reticulon 4 receptor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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