Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GP5 Sequence: fasta or formatted (560aa) NCBI GI: 4758460
Description:

glycoprotein V (platelet)

Referenced in:

Leucine-rich Repeat Family
Platelets and Megakaryocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         46           3
 C cysteine            1.6          9           1
 D aspartate           3.2         18           1
 E glutamate           3.4         19           2
 F phenylalanine       4.5         25           1
 G glycine             9.1         51           2
 H histidine           3.2         18           1
 I isoleucine          2.7         15           2
 K lysine              2.3         13           1
 L leucine            20.9        117           3
 M methionine          1.6          9           1
 N asparagine          4.6         26           2
 P proline             7.0         39           3
 Q glutamine           4.6         26           1
 R arginine            6.8         38           2
 S serine              6.6         37           3
 T threonine           3.9         22           2
 V valine              4.1         23           1
 W tryptophan          1.2          7           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycoprotein V (platelet) 
LRRC15                0.214   leucine rich repeat containing 15 isoform a 
LRRC15                0.214   leucine rich repeat containing 15 isoform b 
CPN2                  0.166   carboxypeptidase N, polypeptide 2, 83kD 
IGFALS                0.124   insulin-like growth factor binding protein, acid la...
IGFALS                0.124   insulin-like growth factor binding protein, acid labi...
SLIT1                 0.105   slit homolog 1 
LINGO4                0.105   leucine rich repeat and Ig domain containing 4 [Homo...
LRIG3                 0.105   leucine-rich repeats and immunoglobulin-like domains...
LGR6                  0.103   leucine-rich repeat-containing G protein-coupled rec...
KIAA0644              0.102   hypothetical protein LOC9865 
LGR6                  0.099   leucine-rich repeat-containing G protein-coupled rec...
LGR5                  0.098   leucine-rich repeat-containing G protein-coupled rece...
LGR4                  0.098   leucine-rich repeat-containing G protein-coupled re...
LRIG1                 0.096   leucine-rich repeats and immunoglobulin-like domains...
NYX                   0.094   nyctalopin precursor 
LRRC4C                0.094   netrin-G1 ligand 
LINGO1                0.093   leucine-rich repeat neuronal 6A 
VASN                  0.091   slit-like 2 
LRIG3                 0.090   leucine-rich repeats and immunoglobulin-like domain...
RTN4RL2               0.087   reticulon 4 receptor-like 2 
LRRC4B                0.086   leucine rich repeat containing 4B 
MFHAS1                0.082   malignant fibrous histiocytoma amplified sequence 1...
LINGO2                0.082   leucine rich repeat and Ig domain containing 2 [Homo...
LRRC4                 0.082   leucine rich repeat containing 4 
LRRN3                 0.082   leucine rich repeat neuronal 3 
LRRN3                 0.082   leucine rich repeat neuronal 3 
LRRN3                 0.082   leucine rich repeat neuronal 3 
LINGO3                0.081   leucine rich repeat and Ig domain containing 3 [Hom...
LRRN2                 0.081   leucine rich repeat neuronal 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press