Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRC15 Sequence: fasta or formatted (581aa) NCBI GI: 18677767
Description:

leucine rich repeat containing 15 isoform b

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [587aa] leucine rich repeat containing 15 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         31           2
 C cysteine            2.8         16           4
 D aspartate           3.4         20           2
 E glutamate           3.8         22           1
 F phenylalanine       3.1         18           1
 G glycine             5.9         34           1
 H histidine           2.8         16           1
 I isoleucine          5.7         33           3
 K lysine              1.9         11           2
 L leucine            17.4        101           4
 M methionine          1.7         10           1
 N asparagine          8.4         49           2
 P proline             6.4         37           2
 Q glutamine           6.4         37           2
 R arginine            4.3         25           1
 S serine              7.7         45           2
 T threonine           4.6         27           2
 V valine              5.2         30           1
 W tryptophan          1.2          7           1
 Y tyrosine            2.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 15 isoform b 
LRRC15                1.000   leucine rich repeat containing 15 isoform a 
GP5                   0.204   glycoprotein V (platelet) 
CPN2                  0.166   carboxypeptidase N, polypeptide 2, 83kD 
IGFALS                0.145   insulin-like growth factor binding protein, acid la...
IGFALS                0.145   insulin-like growth factor binding protein, acid labi...
SLIT3                 0.138   slit homolog 3 
SLIT2                 0.136   slit homolog 2 
LRIG3                 0.134   leucine-rich repeats and immunoglobulin-like domains...
SLIT1                 0.133   slit homolog 1 
LGR4                  0.130   leucine-rich repeat-containing G protein-coupled re...
LGR5                  0.126   leucine-rich repeat-containing G protein-coupled rece...
KIAA0644              0.122   hypothetical protein LOC9865 
LGR6                  0.122   leucine-rich repeat-containing G protein-coupled rec...
LINGO2                0.118   leucine rich repeat and Ig domain containing 2 [Homo...
LRRC70                0.117   synleurin 
LRIG3                 0.117   leucine-rich repeats and immunoglobulin-like domain...
LGR6                  0.112   leucine-rich repeat-containing G protein-coupled rec...
LRIG1                 0.111   leucine-rich repeats and immunoglobulin-like domains...
LINGO1                0.111   leucine-rich repeat neuronal 6A 
LRIG2                 0.108   leucine-rich repeats and immunoglobulin-like domains ...
PODN                  0.104   podocan 
LINGO3                0.100   leucine rich repeat and Ig domain containing 3 [Hom...
PODNL1                0.098   podocan-like 1 isoform 2 
PODNL1                0.098   podocan-like 1 isoform 1 
CHAD                  0.096   chondroadherin precursor 
LRRN2                 0.095   leucine rich repeat neuronal 2 
LRRN2                 0.095   leucine rich repeat neuronal 2 
LRRTM2                0.094   leucine rich repeat transmembrane neuronal 2 
LINGO4                0.094   leucine rich repeat and Ig domain containing 4 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press