Guide to the Human Genome
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Name: CHADL Sequence: fasta or formatted (762aa) NCBI GI: 194440719
Description:

chondroadherin-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         91           4
 C cysteine            2.9         22           1
 D aspartate           3.3         25           1
 E glutamate           5.8         44           4
 F phenylalanine       2.0         15           1
 G glycine             9.4         72           2
 H histidine           3.1         24           2
 I isoleucine          1.2          9           1
 K lysine              1.3         10           1
 L leucine            19.6        149           4
 M methionine          0.3          2           1
 N asparagine          3.3         25           1
 P proline             8.3         63           2
 Q glutamine           4.9         37           1
 R arginine           10.0         76           2
 S serine              4.5         34           2
 T threonine           2.4         18           1
 V valine              4.1         31           1
 W tryptophan          0.9          7           1
 Y tyrosine            1.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chondroadherin-like 
CHAD                  0.152   chondroadherin precursor 
IGFALS                0.091   insulin-like growth factor binding protein, acid la...
IGFALS                0.091   insulin-like growth factor binding protein, acid labi...
LINGO4                0.081   leucine rich repeat and Ig domain containing 4 [Homo...
LINGO3                0.079   leucine rich repeat and Ig domain containing 3 [Hom...
CPN2                  0.077   carboxypeptidase N, polypeptide 2, 83kD 
LRRC70                0.073   synleurin 
RTN4RL2               0.073   reticulon 4 receptor-like 2 
LRRTM1                0.073   leucine rich repeat transmembrane neuronal 1 
SLIT1                 0.072   slit homolog 1 
SLIT2                 0.071   slit homolog 2 
NYX                   0.071   nyctalopin precursor 
LRRTM4                0.069   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.069   leucine rich repeat transmembrane neuronal 4 isofor...
RTN4R                 0.069   reticulon 4 receptor precursor 
LRRTM3                0.069   leucine rich repeat transmembrane neuronal 3 
VASN                  0.069   slit-like 2 
LRRC4C                0.069   netrin-G1 ligand 
LINGO1                0.068   leucine-rich repeat neuronal 6A 
LRRC15                0.068   leucine rich repeat containing 15 isoform a 
LRRC15                0.068   leucine rich repeat containing 15 isoform b 
RTN4RL1               0.068   reticulon 4 receptor-like 1 
SLITRK6               0.068   slit and trk like 6 
SLITRK2               0.066   SLIT and NTRK-like family, member 2 
SLITRK2               0.066   SLIT and NTRK-like family, member 2 
SLITRK2               0.066   SLIT and NTRK-like family, member 2 
SLITRK2               0.066   SLIT and NTRK-like family, member 2 
SLITRK2               0.066   SLIT and NTRK-like family, member 2 
SLITRK2               0.066   SLIT and NTRK-like family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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