Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATF4 Sequence: fasta or formatted (351aa) NCBI GI: 33469976
Description:

activating transcription factor 4

Referenced in:

CREB / ATF Family

Other entries for this name:
alt mRNA [351aa] activating transcription factor 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         22           2
 C cysteine            1.4          5           1
 D aspartate           8.5         30           2
 E glutamate           8.8         31           2
 F phenylalanine       2.8         10           1
 G glycine             6.3         22           1
 H histidine           1.4          5           1
 I isoleucine          2.3          8           1
 K lysine              9.1         32           2
 L leucine            11.4         40           2
 M methionine          2.8         10           1
 N asparagine          2.3          8           2
 P proline             8.3         29           2
 Q glutamine           3.4         12           1
 R arginine            3.1         11           1
 S serine              9.4         33           2
 T threonine           5.1         18           2
 V valine              4.6         16           1
 W tryptophan          0.6          2           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 4 
ATF4                  1.000   activating transcription factor 4 
ATF5                  0.101   activating transcription factor 5 
ATF3                  0.035   activating transcription factor 3 isoform 1 
ATF3                  0.035   activating transcription factor 3 isoform 1 
BATF3                 0.029   basic leucine zipper transcription factor, ATF-like 3...
CREB5                 0.029   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.029   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.029   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.029   cAMP responsive element binding protein 5 isoform al...
ATF2                  0.028   activating transcription factor 2 
BATF                  0.025   basic leucine zipper transcription factor, ATF-like [...
C10orf90              0.025   hypothetical protein LOC118611 
JDP2                  0.025   Jun dimerization protein 2 isoform b 
JDP2                  0.025   Jun dimerization protein 2 isoform a 
JDP2                  0.025   Jun dimerization protein 2 isoform a 
JDP2                  0.025   Jun dimerization protein 2 isoform a 
HLF                   0.023   hepatic leukemia factor 
DNAJC17               0.023   DnaJ (Hsp40) homolog, subfamily C, member 17 
FOSB                  0.023   FBJ murine osteosarcoma viral oncogene homolog B is...
FOSL2                 0.022   FOS-like antigen 2 
CHAF1A                0.022   chromatin assembly factor 1, subunit A (p150) 
CEBPD                 0.022   CCAAT/enhancer binding protein delta 
CLIP2                 0.021   CAP-GLY domain containing linker protein 2 isoform ...
CLIP2                 0.021   CAP-GLY domain containing linker protein 2 isoform 2...
TEF                   0.021   thyrotrophic embryonic factor isoform 2 
TEF                   0.021   thyrotrophic embryonic factor isoform 1 
PLEKHO2               0.021   pleckstrin homology domain containing, family O memb...
FOS                   0.019   v-fos FBJ murine osteosarcoma viral oncogene homolog ...
CHD3                  0.019   chromodomain helicase DNA binding protein 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press