Guide to the Human Genome
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Name: TCF12 Sequence: fasta or formatted (682aa) NCBI GI: 4507391
Description:

transcription factor 12 isoform b

Referenced in:

Nuclear Receptors
Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [706aa] transcription factor 12 isoform a
alt prot [706aa] transcription factor 12 isoform a
alt mRNA [682aa] transcription factor 12 isoform b
alt prot [512aa] transcription factor 12 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         35           2
 C cysteine            0.4          3           1
 D aspartate           5.4         37           2
 E glutamate           4.7         32           3
 F phenylalanine       2.2         15           2
 G glycine             8.1         55           2
 H histidine           3.8         26           1
 I isoleucine          2.3         16           1
 K lysine              3.7         25           2
 L leucine             8.4         57           2
 M methionine          2.5         17           1
 N asparagine          4.8         33           2
 P proline             8.4         57           2
 Q glutamine           3.8         26           3
 R arginine            5.6         38           3
 S serine             18.0        123           3
 T threonine           6.9         47           2
 V valine              3.4         23           2
 W tryptophan          0.4          3           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 12 isoform b 
TCF12                 1.000   transcription factor 12 isoform b 
TCF12                 0.990   transcription factor 12 isoform a 
TCF12                 0.990   transcription factor 12 isoform a 
TCF12                 0.712   transcription factor 12 isoform c 
TCF4                  0.583   transcription factor 4 isoform a 
TCF4                  0.578   transcription factor 4 isoform b 
TCF3                  0.425   transcription factor 3 isoform E12 
TCF3                  0.413   transcription factor 3 isoform E47 
DSPP                  0.035   dentin sialophosphoprotein preproprotein 
MUC12                 0.031   PREDICTED: mucin 12 
MUC6                  0.025   mucin 6, gastric 
LOC100133714          0.022   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.022   PREDICTED: mucin 12 
POLR2A                0.021   DNA-directed RNA polymerase II A 
MUC12                 0.020   PREDICTED: mucin 12, cell surface associated 
LOC100288540          0.019   PREDICTED: hypothetical protein XP_002342775 
POM121C               0.019   POM121 membrane glycoprotein (rat)-like 
HRNR                  0.018   hornerin 
MED1                  0.016   mediator complex subunit 1 
POM121                0.016   nuclear pore membrane protein 121 
ARHGAP17              0.015   nadrin isoform 1 
HECTD1                0.015   HECT domain containing 1 
LOC100133790          0.015   PREDICTED: intestinal mucin-like, partial 
MEX3B                 0.015   mex-3 homolog B 
LOC100133915          0.015   PREDICTED: hypothetical protein 
MUC16                 0.014   mucin 16 
LOC100130716          0.014   PREDICTED: similar to mucin 11 
LOC100130716          0.014   PREDICTED: similar to Mucin-12 
FLG                   0.014   filaggrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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