Guide to the Human Genome
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Name: LOC100288540 Sequence: fasta or formatted (834aa) NCBI GI: 239743232
Description:

PREDICTED: hypothetical protein XP_002342775

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7        114           3
 C cysteine            0.2          2           1
 D aspartate           1.2         10           1
 E glutamate           2.4         20           3
 F phenylalanine       6.4         53           2
 G glycine             8.4         70           2
 H histidine           0.6          5           2
 I isoleucine          1.7         14           1
 K lysine              3.8         32           2
 L leucine             5.8         48           2
 M methionine          1.0          8           1
 N asparagine          2.2         18           1
 P proline            14.1        118           4
 Q glutamine           4.3         36           1
 R arginine            2.0         17           2
 S serine             16.4        137           4
 T threonine          12.7        106           4
 V valine              2.6         22           1
 W tryptophan          0.2          2           1
 Y tyrosine            0.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342775 
POM121C               0.971   POM121 membrane glycoprotein (rat)-like 
POM121                0.967   nuclear pore membrane protein 121 
POM121L2              0.286   POM121 membrane glycoprotein-like 2 
LOC100292653          0.220   PREDICTED: similar to hCG1998564 
NUP214                0.080   nucleoporin 214kDa 
C15orf2               0.080   hypothetical protein LOC23742 
MUC2                  0.069   mucin 2 precursor 
FLJ22184              0.062   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.061   nascent polypeptide-associated complex alpha subuni...
MUC5B                 0.059   mucin 5, subtype B, tracheobronchial 
MUC17                 0.054   mucin 17 
LOC729915             0.054   PREDICTED: similar to Putative POM121-like protein ...
MUC6                  0.053   mucin 6, gastric 
MUC4                  0.052   mucin 4 isoform a 
SRCAP                 0.052   Snf2-related CBP activator protein 
LOC100294420          0.051   PREDICTED: similar to mucin 2 
LOC100133756          0.051   PREDICTED: hypothetical protein, partial 
TRO                   0.050   trophinin isoform 5 
PRG4                  0.049   proteoglycan 4 isoform B 
PRG4                  0.049   proteoglycan 4 isoform A 
LOC100133280          0.049   PREDICTED: similar to Putative POM121-like protein ...
MUC5AC                0.048   mucin 5AC 
MUC12                 0.046   PREDICTED: mucin 12 
MUC12                 0.045   PREDICTED: mucin 12 
SRRM2                 0.045   splicing coactivator subunit SRm300 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.043   PREDICTED: hypothetical protein LOC80164 
PRG4                  0.043   proteoglycan 4 isoform D 
PRG4                  0.043   proteoglycan 4 isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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