Guide to the Human Genome
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Name: TCF3 Sequence: fasta or formatted (654aa) NCBI GI: 27777636
Description:

transcription factor 3 isoform E12

Referenced in:

Muscle
Stem Cells and Early Development
Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [651aa] transcription factor 3 isoform E47
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         59           3
 C cysteine            0.3          2           1
 D aspartate           4.6         30           2
 E glutamate           6.0         39           3
 F phenylalanine       2.4         16           1
 G glycine            13.3         87           3
 H histidine           3.7         24           1
 I isoleucine          1.1          7           1
 K lysine              3.5         23           2
 L leucine             9.3         61           2
 M methionine          2.0         13           2
 N asparagine          2.4         16           2
 P proline             9.2         60           2
 Q glutamine           3.2         21           2
 R arginine            5.0         33           3
 S serine             14.4         94           4
 T threonine           4.3         28           2
 V valine              3.7         24           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 3 isoform E12 
TCF3                  0.959   transcription factor 3 isoform E47 
TCF12                 0.441   transcription factor 12 isoform b 
TCF12                 0.441   transcription factor 12 isoform b 
TCF12                 0.433   transcription factor 12 isoform a 
TCF12                 0.433   transcription factor 12 isoform a 
TCF4                  0.431   transcription factor 4 isoform a 
TCF4                  0.427   transcription factor 4 isoform b 
TCF12                 0.318   transcription factor 12 isoform c 
HRNR                  0.028   hornerin 
COL1A1                0.026   alpha 1 type I collagen preproprotein 
COL3A1                0.026   collagen type III alpha 1 preproprotein 
COL2A1                0.025   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.025   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.025   alpha 2 type V collagen preproprotein 
COL13A1               0.025   alpha 1 type XIII collagen isoform 6 
MUC12                 0.024   PREDICTED: mucin 12 
LOC100133915          0.023   PREDICTED: hypothetical protein 
LOC100293409          0.022   PREDICTED: similar to Mucin-19 
LOC100291118          0.022   PREDICTED: hypothetical protein XP_002347351 
COL4A6                0.022   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.022   type IV alpha 6 collagen isoform B precursor 
IRS1                  0.022   insulin receptor substrate 1 
LOC100287737          0.022   PREDICTED: hypothetical protein XP_002343203 
COL11A2               0.022   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.022   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.022   collagen, type XI, alpha 2 isoform 1 preproprotein ...
MED1                  0.021   mediator complex subunit 1 
COL17A1               0.021   alpha 1 type XVII collagen 
COL4A3                0.020   alpha 3 type IV collagen isoform 4 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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