Guide to the Human Genome
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Name: ABCD3 Sequence: fasta or formatted (659aa) NCBI GI: 4506341
Description:

ATP-binding cassette, sub-family D, member 3 isoform a

Referenced in:

ATP-binding Cassette Proteins
Peroxisomes

Other entries for this name:
alt prot [236aa] ATP-binding cassette, sub-family D, member 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         32           2
 C cysteine            1.4          9           1
 D aspartate           4.2         28           1
 E glutamate           5.8         38           2
 F phenylalanine       4.9         32           2
 G glycine             7.6         50           2
 H histidine           2.6         17           2
 I isoleucine          6.2         41           3
 K lysine              6.5         43           2
 L leucine            12.4         82           3
 M methionine          3.0         20           2
 N asparagine          3.9         26           2
 P proline             3.2         21           2
 Q glutamine           3.5         23           2
 R arginine            7.0         46           3
 S serine              5.9         39           2
 T threonine           4.4         29           1
 V valine              7.0         46           2
 W tryptophan          0.8          5           1
 Y tyrosine            4.9         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family D, member 3 isoform ... 
ABCD2                 0.335   ATP-binding cassette, sub-family D, member 2 
ABCD1                 0.334   ATP-binding cassette, sub-family D (ALD), member 1 [H...
ABCD3                 0.330   ATP-binding cassette, sub-family D, member 3 isofor...
ABCD4                 0.176   ATP-binding cassette, sub-family D, member 4 
ABCC4                 0.040   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC4                 0.040   ATP-binding cassette, sub-family C, member 4 isofor...
TAP2                  0.039   transporter 2, ATP-binding cassette, sub-family B is...
ABCB6                 0.038   ATP-binding cassette, sub-family B, member 6 
TAP2                  0.035   transporter 2, ATP-binding cassette, sub-family B is...
ABCC2                 0.034   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCB9                 0.034   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.034   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.034   ATP-binding cassette, sub-family B (MDR/TAP), member...
TAP1                  0.034   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCC3                 0.033   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC11                0.033   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.033   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.033   ATP-binding cassette, sub-family C, member 11 isofor...
ABCB1                 0.032   ATP-binding cassette, subfamily B, member 1 
ABCC12                0.032   ATP-binding cassette protein C12 
ABCB5                 0.032   ATP-binding cassette, sub-family B, member 5 
ABCB4                 0.032   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.032   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.032   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB11                0.031   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCC5                 0.029   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC10                0.029   ATP-binding cassette, sub-family C, member 10 
ABCB10                0.027   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCC9                 0.026   ATP-binding cassette, sub-family C, member 9 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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