Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ABCC11 Sequence: fasta or formatted (1344aa) NCBI GI: 21729876
Description:

ATP-binding cassette, sub-family C, member 11 isoform b

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [1382aa] ATP-binding cassette, sub-family C, member 11 isoform a
alt prot [1382aa] ATP-binding cassette, sub-family C, member 11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         87           2
 C cysteine            2.1         28           2
 D aspartate           3.4         46           2
 E glutamate           5.7         76           3
 F phenylalanine       5.1         68           3
 G glycine             6.5         88           2
 H histidine           2.2         30           2
 I isoleucine          7.5        101           2
 K lysine              4.5         61           2
 L leucine            12.6        169           3
 M methionine          3.1         41           2
 N asparagine          3.2         43           2
 P proline             3.7         50           2
 Q glutamine           4.2         57           2
 R arginine            4.9         66           2
 S serine              8.1        109           3
 T threonine           5.5         74           2
 V valine              7.2         97           2
 W tryptophan          1.3         17           2
 Y tyrosine            2.7         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 11 isofor... 
ABCC11                0.993   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.993   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC12                0.448   ATP-binding cassette protein C12 
ABCC5                 0.351   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC4                 0.234   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC3                 0.226   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC2                 0.215   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC1                 0.214   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.195   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC10                0.190   ATP-binding cassette, sub-family C, member 10 
ABCC6                 0.188   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC8                 0.188   ATP-binding cassette, sub-family C, member 8 
LOC100292715          0.188   PREDICTED: hypothetical protein 
ABCC9                 0.184   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.181   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.181   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC1                 0.169   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.151   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC4                 0.139   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC1                 0.122   ATP-binding cassette, sub-family C, member 1 isofor...
CFTR                  0.086   cystic fibrosis transmembrane conductance regulator ...
ABCB1                 0.059   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.054   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB4                 0.034   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.034   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB4                 0.033   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB10                0.032   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB5                 0.030   ATP-binding cassette, sub-family B, member 5 
ABCB7                 0.030   ATP-binding cassette, sub-family B, member 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press